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The map label for this gene is rarA [H]

Identifier: 37521678

GI number: 37521678

Start: 2260309

End: 2262552

Strand: Direct

Name: rarA [H]

Synonym: glr2109

Alternate gene names: 37521678

Gene position: 2260309-2262552 (Clockwise)

Preceding gene: 37521677

Following gene: 37521679

Centisome position: 48.51

GC content: 65.69

Gene sequence:

>2244_bases
GTGGAAGGAAGGAAATACCCCTCCTTACTACGGCTAAACGTGGATCTCTTCGAGCGGCACCGCGAGCAGCAGCAGGCGGC
GGAGGCACCGCTCGCCGACCGGATGCGCCCGCGTTCGCTCGATCAATTCGTCGGCCAGGGCCACATCGTCGGCCCCGGCC
GACTCTTAAGGCGGGCGATCCAGGCCGATCAGCTCTCTTCGCTGATTTTCTACGGCCCTCCGGGCACCGGCAAAACGACG
CTGGCACGGATCATCGCGGGCACGACCCGCGCCCACTTCATCGCCATCAACGCCGTGCTCGCCGGGGTCAAAGATATCCG
CGAGGCGATCGACGAGGCCAAAAGCCGCCGCGGCCAGTTTGGCCGGCGGACCATCTTGTTCGTGGACGAAGTGCACCGCT
TCAACAAGTCCCAGCAGGACGCGCTGTTGCCCTGGATCGAAAACGGCACGATCGTGCTGGTGGGCGCCACCACCGAGAAC
CCGTTTTTTGAAGTCAACAAGGCCCTGGTGAGCCGCTCACGTTTATTTCAGCTCAAGCTGCTGGAAAGTGAGGATCTGCG
GGCAGTAGCCCTGCAGGCGCTCGCCGATACCGAGCGCGGCTACGGCAAGCGCAATGTGCGGCTCGATCCCGAGGCGCTTG
CGCACCTGGTGGATGTGGCCGGGGGCGACGCGCGCACGCTGCTCAACGCCCTGGAACTGGCCGTTGAGACCACTCCGGCA
GATGGCGACGGTGCAATCCGCATCACCCTCCCGGTTGCGGAAGAATCGATCCAGCGTCGGGCAGTGCTCTACGACAAAGA
GGGCGACGTCCACTTCGATACGATCAGCGCCTATATCAAAAGCCTCCGAGGCTCGGACCCCGATGCCGCCTTGTACTGGC
TGGCACGGATGATCTACGCGGGGGAAGAGCCGCGCTTTATCTTCCGGCGGCTGCTCATCCAGGCGAGCGAGGATGTGGGC
CTCGCCGACCCGCAGGCGTTGGCGGTCGTCGTGGCCTGCGCCGAGGCTTTTGACCGGGTGGGGATGCCCGAGGGGCGCTA
TCACCTGGCCCAGGCGACGCTGTACCTGGCCACTGCGCCCAAATCCAACAGCGCCATGGCCTTCTTCGACGCCCTGGCGG
CGGTCGAGGGCGAGCGGGCCTCGGATATTCCCAACCCCCTCAAGGACGCAAACCGCGACAAGGAGGGCTTCGGCCACGGC
GCGGGCTACCTCTACCCGCACGCCTACCGCGACCACTGGGTTGCCCAGCAGTATCTTCCCACCAGCCTGCAGGGGCAACT
GTTTTATCAGCCCGGCGACCAGGGTTACGAGGCTGGTATCCAGGCCGCCGTCGCCCGTAGACGTGAAGCGCAACTGGCCG
CCCTGGTCGAAACCGATAGTCCCGAGCGGCTCAGTTTCGGTCCGGCCGACGGGCCGAGCGAGCGCTGGCTGGCGCGGGCC
ATGGGCCGCCAGGGCGAACAGCTCGCCCGCCTGCGCGATCGGATCTTTGAACTGGCAGCCCCCGAGCGCCACCACGTCAT
CCTCGACGCGGCGGCAGGCAGCGGCCTGCTCACCTGGGAAGCCATCCGCCGCACCCCGGAAGGGGGTGTCTACGCCCGTG
CGGCCAACGCTGCCGACGCCGACGCCCTTGCCGAGCAGGCAGCGGCCTTGAGCCCTCTGCGCCGCCCGGTGATTCTGACG
GCGGCTCTCGAACACCTGACCGCAGCGGTAGGGCAGCATAGTCCTGGTTTGCGCTTCGAGCGGATTGTCGGACGAAACCT
GCTCAAAGGCACACCCCACAAAATTGCTGTCCTTACCGCGCTGCAAAATCTACTGGCCCCGCGCGGCGTGCTGGTGATTG
CCGAAAACATGCCGAGCCGGGGAAGTCGCCTCTGGCAACTGCTCGACCCCGCCTGGCTTGCGGCCGATCTCTACCGGCGG
GTTGTCGAAGCCGAGGAGCTTGCCTTTGGCGACGACCCGCAATTGGGCTGGGAACCGGACGACCTGCAATCGGTCTTCGA
GCAGGCGGGCCTGGCCTGTGAGATCACCAGTGAAAGTGTGGAGGGTGAACTGCGCGTCAGTGGGCCGCTATTGGCGCGCT
GGTTTGCCAGATCCCATCCGAGGGGCGCTTATGCTGCCCAGCTGGCTCGGCTGCTGTCGCCCGCAGAAGTAGAGAGTCTC
GAAGCAATCTTTAGGCGGCAGTTACTCGACCGGGTAGTGTCCTGGTCCAGTGCGGTGGCTTATGCAGTCGGGCGGCCAGT
CTGA

Upstream 100 bases:

>100_bases
TGCCGGTGACGGGCAAAGATCTGCGCATCGCCATCGACGCGGTGCTCGGGGGCAAAGCGCCCGCCATCGAGCAAAAGCCC
AGCATCGGCTGCAACATCAA

Downstream 100 bases:

>100_bases
GCGAATTACGCACAGGCCCTTGCACTCGGCTGCTCGGTGTGCTTGTCTTAAATCTAAGTTAAGAGATCATAAAAAATGAG
CCACCCAAATCCGAGCAGCG

Product: recombination factor protein RarA/unknown domain fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 747; Mature: 747

Protein sequence:

>747_residues
MEGRKYPSLLRLNVDLFERHREQQQAAEAPLADRMRPRSLDQFVGQGHIVGPGRLLRRAIQADQLSSLIFYGPPGTGKTT
LARIIAGTTRAHFIAINAVLAGVKDIREAIDEAKSRRGQFGRRTILFVDEVHRFNKSQQDALLPWIENGTIVLVGATTEN
PFFEVNKALVSRSRLFQLKLLESEDLRAVALQALADTERGYGKRNVRLDPEALAHLVDVAGGDARTLLNALELAVETTPA
DGDGAIRITLPVAEESIQRRAVLYDKEGDVHFDTISAYIKSLRGSDPDAALYWLARMIYAGEEPRFIFRRLLIQASEDVG
LADPQALAVVVACAEAFDRVGMPEGRYHLAQATLYLATAPKSNSAMAFFDALAAVEGERASDIPNPLKDANRDKEGFGHG
AGYLYPHAYRDHWVAQQYLPTSLQGQLFYQPGDQGYEAGIQAAVARRREAQLAALVETDSPERLSFGPADGPSERWLARA
MGRQGEQLARLRDRIFELAAPERHHVILDAAAGSGLLTWEAIRRTPEGGVYARAANAADADALAEQAAALSPLRRPVILT
AALEHLTAAVGQHSPGLRFERIVGRNLLKGTPHKIAVLTALQNLLAPRGVLVIAENMPSRGSRLWQLLDPAWLAADLYRR
VVEAEELAFGDDPQLGWEPDDLQSVFEQAGLACEITSESVEGELRVSGPLLARWFARSHPRGAYAAQLARLLSPAEVESL
EAIFRRQLLDRVVSWSSAVAYAVGRPV

Sequences:

>Translated_747_residues
MEGRKYPSLLRLNVDLFERHREQQQAAEAPLADRMRPRSLDQFVGQGHIVGPGRLLRRAIQADQLSSLIFYGPPGTGKTT
LARIIAGTTRAHFIAINAVLAGVKDIREAIDEAKSRRGQFGRRTILFVDEVHRFNKSQQDALLPWIENGTIVLVGATTEN
PFFEVNKALVSRSRLFQLKLLESEDLRAVALQALADTERGYGKRNVRLDPEALAHLVDVAGGDARTLLNALELAVETTPA
DGDGAIRITLPVAEESIQRRAVLYDKEGDVHFDTISAYIKSLRGSDPDAALYWLARMIYAGEEPRFIFRRLLIQASEDVG
LADPQALAVVVACAEAFDRVGMPEGRYHLAQATLYLATAPKSNSAMAFFDALAAVEGERASDIPNPLKDANRDKEGFGHG
AGYLYPHAYRDHWVAQQYLPTSLQGQLFYQPGDQGYEAGIQAAVARRREAQLAALVETDSPERLSFGPADGPSERWLARA
MGRQGEQLARLRDRIFELAAPERHHVILDAAAGSGLLTWEAIRRTPEGGVYARAANAADADALAEQAAALSPLRRPVILT
AALEHLTAAVGQHSPGLRFERIVGRNLLKGTPHKIAVLTALQNLLAPRGVLVIAENMPSRGSRLWQLLDPAWLAADLYRR
VVEAEELAFGDDPQLGWEPDDLQSVFEQAGLACEITSESVEGELRVSGPLLARWFARSHPRGAYAAQLARLLSPAEVESL
EAIFRRQLLDRVVSWSSAVAYAVGRPV
>Mature_747_residues
MEGRKYPSLLRLNVDLFERHREQQQAAEAPLADRMRPRSLDQFVGQGHIVGPGRLLRRAIQADQLSSLIFYGPPGTGKTT
LARIIAGTTRAHFIAINAVLAGVKDIREAIDEAKSRRGQFGRRTILFVDEVHRFNKSQQDALLPWIENGTIVLVGATTEN
PFFEVNKALVSRSRLFQLKLLESEDLRAVALQALADTERGYGKRNVRLDPEALAHLVDVAGGDARTLLNALELAVETTPA
DGDGAIRITLPVAEESIQRRAVLYDKEGDVHFDTISAYIKSLRGSDPDAALYWLARMIYAGEEPRFIFRRLLIQASEDVG
LADPQALAVVVACAEAFDRVGMPEGRYHLAQATLYLATAPKSNSAMAFFDALAAVEGERASDIPNPLKDANRDKEGFGHG
AGYLYPHAYRDHWVAQQYLPTSLQGQLFYQPGDQGYEAGIQAAVARRREAQLAALVETDSPERLSFGPADGPSERWLARA
MGRQGEQLARLRDRIFELAAPERHHVILDAAAGSGLLTWEAIRRTPEGGVYARAANAADADALAEQAAALSPLRRPVILT
AALEHLTAAVGQHSPGLRFERIVGRNLLKGTPHKIAVLTALQNLLAPRGVLVIAENMPSRGSRLWQLLDPAWLAADLYRR
VVEAEELAFGDDPQLGWEPDDLQSVFEQAGLACEITSESVEGELRVSGPLLARWFARSHPRGAYAAQLARLLSPAEVESL
EAIFRRQLLDRVVSWSSAVAYAVGRPV

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=40.2745995423341, Blast_Score=303, Evalue=4e-82,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=36.6132723112128, Blast_Score=253, Evalue=5e-67,
Organism=Homo sapiens, GI4506491, Length=233, Percent_Identity=27.0386266094421, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI31881687, Length=233, Percent_Identity=27.0386266094421, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787119, Length=419, Percent_Identity=47.255369928401, Blast_Score=354, Evalue=1e-98,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=36.7058823529412, Blast_Score=266, Evalue=1e-71,
Organism=Saccharomyces cerevisiae, GI6324039, Length=283, Percent_Identity=26.1484098939929, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322528, Length=304, Percent_Identity=25.9868421052632, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 81965; Mature: 81965

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGRKYPSLLRLNVDLFERHREQQQAAEAPLADRMRPRSLDQFVGQGHIVGPGRLLRRAI
CCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHCCCCEECHHHHHHHHH
QADQLSSLIFYGPPGTGKTTLARIIAGTTRAHFIAINAVLAGVKDIREAIDEAKSRRGQF
HHHHHCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GRRTILFVDEVHRFNKSQQDALLPWIENGTIVLVGATTENPFFEVNKALVSRSRLFQLKL
CCEEEEEEHHHHHCCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHEEEEE
LESEDLRAVALQALADTERGYGKRNVRLDPEALAHLVDVAGGDARTLLNALELAVETTPA
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
DGDGAIRITLPVAEESIQRRAVLYDKEGDVHFDTISAYIKSLRGSDPDAALYWLARMIYA
CCCCEEEEEEECCHHHHHHHHEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
GEEPRFIFRRLLIQASEDVGLADPQALAVVVACAEAFDRVGMPEGRYHLAQATLYLATAP
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHEEEEEEEEECC
KSNSAMAFFDALAAVEGERASDIPNPLKDANRDKEGFGHGAGYLYPHAYRDHWVAQQYLP
CCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
TSLQGQLFYQPGDQGYEAGIQAAVARRREAQLAALVETDSPERLSFGPADGPSERWLARA
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHH
MGRQGEQLARLRDRIFELAAPERHHVILDAAAGSGLLTWEAIRRTPEGGVYARAANAADA
HCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEHHHHHCCCCCCEEEEECCCCCH
DALAEQAAALSPLRRPVILTAALEHLTAAVGQHSPGLRFERIVGRNLLKGTPHKIAVLTA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCHHHHHHHH
LQNLLAPRGVLVIAENMPSRGSRLWQLLDPAWLAADLYRRVVEAEELAFGDDPQLGWEPD
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
DLQSVFEQAGLACEITSESVEGELRVSGPLLARWFARSHPRGAYAAQLARLLSPAEVESL
HHHHHHHHCCCEEEEECCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH
EAIFRRQLLDRVVSWSSAVAYAVGRPV
HHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEGRKYPSLLRLNVDLFERHREQQQAAEAPLADRMRPRSLDQFVGQGHIVGPGRLLRRAI
CCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHCCCCEECHHHHHHHHH
QADQLSSLIFYGPPGTGKTTLARIIAGTTRAHFIAINAVLAGVKDIREAIDEAKSRRGQF
HHHHHCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GRRTILFVDEVHRFNKSQQDALLPWIENGTIVLVGATTENPFFEVNKALVSRSRLFQLKL
CCEEEEEEHHHHHCCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHEEEEE
LESEDLRAVALQALADTERGYGKRNVRLDPEALAHLVDVAGGDARTLLNALELAVETTPA
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
DGDGAIRITLPVAEESIQRRAVLYDKEGDVHFDTISAYIKSLRGSDPDAALYWLARMIYA
CCCCEEEEEEECCHHHHHHHHEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
GEEPRFIFRRLLIQASEDVGLADPQALAVVVACAEAFDRVGMPEGRYHLAQATLYLATAP
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEHEEEEEEEEECC
KSNSAMAFFDALAAVEGERASDIPNPLKDANRDKEGFGHGAGYLYPHAYRDHWVAQQYLP
CCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
TSLQGQLFYQPGDQGYEAGIQAAVARRREAQLAALVETDSPERLSFGPADGPSERWLARA
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHH
MGRQGEQLARLRDRIFELAAPERHHVILDAAAGSGLLTWEAIRRTPEGGVYARAANAADA
HCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEHHHHHCCCCCCEEEEECCCCCH
DALAEQAAALSPLRRPVILTAALEHLTAAVGQHSPGLRFERIVGRNLLKGTPHKIAVLTA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCHHHHHHHH
LQNLLAPRGVLVIAENMPSRGSRLWQLLDPAWLAADLYRRVVEAEELAFGDDPQLGWEPD
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
DLQSVFEQAGLACEITSESVEGELRVSGPLLARWFARSHPRGAYAAQLARLLSPAEVESL
HHHHHHHHCCCEEEEECCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH
EAIFRRQLLDRVVSWSSAVAYAVGRPV
HHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]