Click here to switch to the map view.

The map label for this gene is clpC [H]

Identifier: 37521637

GI number: 37521637

Start: 2220655

End: 2221647

Strand: Reverse

Name: clpC [H]

Synonym: gll2068

Alternate gene names: 37521637

Gene position: 2221647-2220655 (Counterclockwise)

Preceding gene: 37521638

Following gene: 37521631

Centisome position: 47.68

GC content: 56.5

Gene sequence:

>993_bases
ATGTTCGAGCGGTTTACCGAGAAGTCGATCAAAGTGGTCATGCTGGCCCAGGAGGAAGCCCGTCGCCTGGGGCACAACTT
TGTGGGCACCGAGCAAATCCTCTGCGCGCTTGTTGGCGAAGGCACCGGAAACGCCGCTCACGTGCTCAAGTCAGCGGGGG
TCAGCTTGAAGCGTGCCCGCATCGAGGTCGAAAAGATCATTGGTCGCGGCAGTGGGTTTGTCGCTGTCGAGATTCCGTTT
ACCCCCCGGACCAAGCGGGTTCTGGAGCTATCGCTTCAAGAAGCGCGCTACCTGGGGCACAACCATATCGGTACGGAACA
CCTGCTCATCGGCTTGCTGCAAGAGGGAGAAGGAGTTGCTTCTCGCGTTCTTGAAAATATGGGCGTTAATCTTGCGCAGC
TGCTGGAGCAAATCAGGAGCACTGCCCAGCAATCTCCGGAACCCCCATCAAGTTTGCCCCGTACACTTTCTTCGTCTGCG
AGCCGGGTTCGCCCCCTCATTGAAGAGCTGAGTAACCCAATCTTTCGCTTTGTTGAACCGGTAGCGGCCATCGTCGCTGC
CCGCTTCAGCGCCGCTCTCTACCGGTGGGTGGAACCGCGCCGACTGGGACATGTCCTTAACTCGCCCAGCCTGCGACTGG
TGCTCAACGAGGACGATTACTTGACTTTGACTCCCAACGTCGCTTTTATTGGCCACGGTCAGCTTGATCAACACCCTTTT
CAAGATGTCATCCCCGAGCTGGCAGCTGTGGTTCTCTGCGGCCCTGAGCCTTCCGCAAAGCAAACGCGACTGGAAATTTT
GATGGAGTATGGGGTAAAGGTTGGCCTGTTGCTTGATCCCCAATTGCAGACGGTTTCTGTTTATTGCGGGGAGGACGATA
GGCAAATTCTGCAAGGCCAGGACACGCTCAGATTACACGAACTTTTTCCCGGCTGGGAAGTACCGATCTCAGAATTCTGG
CCTCCCCTGGCGGAAACCCAATCGGAATCGTGA

Upstream 100 bases:

>100_bases
CGTCGCCCTGCGCCCGGGCTCGCTGGTGGTCAATTCCAGCCAGGGTGGCGGCTCCAAAGACACCTGGGTACTGGGCAAAT
CCTGATTTGGGGGGACACCC

Downstream 100 bases:

>100_bases
AATCCAGAACTCGCCTGAGCGAATAAAAAAGTCTTGACCAAATGATGAACTGGAAATGTTGAGAGAGGTAGGAGTTTATA
GCCTGAGATCTGGTGGTTGG

Product: endopeptidase Clp ATP-binding chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MFERFTEKSIKVVMLAQEEARRLGHNFVGTEQILCALVGEGTGNAAHVLKSAGVSLKRARIEVEKIIGRGSGFVAVEIPF
TPRTKRVLELSLQEARYLGHNHIGTEHLLIGLLQEGEGVASRVLENMGVNLAQLLEQIRSTAQQSPEPPSSLPRTLSSSA
SRVRPLIEELSNPIFRFVEPVAAIVAARFSAALYRWVEPRRLGHVLNSPSLRLVLNEDDYLTLTPNVAFIGHGQLDQHPF
QDVIPELAAVVLCGPEPSAKQTRLEILMEYGVKVGLLLDPQLQTVSVYCGEDDRQILQGQDTLRLHELFPGWEVPISEFW
PPLAETQSES

Sequences:

>Translated_330_residues
MFERFTEKSIKVVMLAQEEARRLGHNFVGTEQILCALVGEGTGNAAHVLKSAGVSLKRARIEVEKIIGRGSGFVAVEIPF
TPRTKRVLELSLQEARYLGHNHIGTEHLLIGLLQEGEGVASRVLENMGVNLAQLLEQIRSTAQQSPEPPSSLPRTLSSSA
SRVRPLIEELSNPIFRFVEPVAAIVAARFSAALYRWVEPRRLGHVLNSPSLRLVLNEDDYLTLTPNVAFIGHGQLDQHPF
QDVIPELAAVVLCGPEPSAKQTRLEILMEYGVKVGLLLDPQLQTVSVYCGEDDRQILQGQDTLRLHELFPGWEVPISEFW
PPLAETQSES
>Mature_330_residues
MFERFTEKSIKVVMLAQEEARRLGHNFVGTEQILCALVGEGTGNAAHVLKSAGVSLKRARIEVEKIIGRGSGFVAVEIPF
TPRTKRVLELSLQEARYLGHNHIGTEHLLIGLLQEGEGVASRVLENMGVNLAQLLEQIRSTAQQSPEPPSSLPRTLSSSA
SRVRPLIEELSNPIFRFVEPVAAIVAARFSAALYRWVEPRRLGHVLNSPSLRLVLNEDDYLTLTPNVAFIGHGQLDQHPF
QDVIPELAAVVLCGPEPSAKQTRLEILMEYGVKVGLLLDPQLQTVSVYCGEDDRQILQGQDTLRLHELFPGWEVPISEFW
PPLAETQSES

Specific function: Unknown

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 UVR domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150
- InterPro:   IPR001943 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]

EC number: NA

Molecular weight: Translated: 36541; Mature: 36541

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFERFTEKSIKVVMLAQEEARRLGHNFVGTEQILCALVGEGTGNAAHVLKSAGVSLKRAR
CCCCCCCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
IEVEKIIGRGSGFVAVEIPFTPRTKRVLELSLQEARYLGHNHIGTEHLLIGLLQEGEGVA
HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
SRVLENMGVNLAQLLEQIRSTAQQSPEPPSSLPRTLSSSASRVRPLIEELSNPIFRFVEP
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAIVAARFSAALYRWVEPRRLGHVLNSPSLRLVLNEDDYLTLTPNVAFIGHGQLDQHPF
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCEEEECCCEEEEECCCCCCCCH
QDVIPELAAVVLCGPEPSAKQTRLEILMEYGVKVGLLLDPQLQTVSVYCGEDDRQILQGQ
HHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCHHHHHCCC
DTLRLHELFPGWEVPISEFWPPLAETQSES
CHHHHHHHCCCCCCCHHHHCCCHHHCCCCC
>Mature Secondary Structure
MFERFTEKSIKVVMLAQEEARRLGHNFVGTEQILCALVGEGTGNAAHVLKSAGVSLKRAR
CCCCCCCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
IEVEKIIGRGSGFVAVEIPFTPRTKRVLELSLQEARYLGHNHIGTEHLLIGLLQEGEGVA
HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHH
SRVLENMGVNLAQLLEQIRSTAQQSPEPPSSLPRTLSSSASRVRPLIEELSNPIFRFVEP
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAIVAARFSAALYRWVEPRRLGHVLNSPSLRLVLNEDDYLTLTPNVAFIGHGQLDQHPF
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCEEEECCCEEEEECCCCCCCCH
QDVIPELAAVVLCGPEPSAKQTRLEILMEYGVKVGLLLDPQLQTVSVYCGEDDRQILQGQ
HHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCHHHHHCCC
DTLRLHELFPGWEVPISEFWPPLAETQSES
CHHHHHHHCCCCCCCHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]