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The map label for this gene is traD [C]

Identifier: 37521609

GI number: 37521609

Start: 2190625

End: 2192241

Strand: Direct

Name: traD [C]

Synonym: glr2040

Alternate gene names: 37521609

Gene position: 2190625-2192241 (Clockwise)

Preceding gene: 37521608

Following gene: 37521611

Centisome position: 47.02

GC content: 63.02

Gene sequence:

>1617_bases
ATGGAAAACGACTGGACAAATTACGCCCTGCTTGCCGGATTGGGAGCGGCGGCTCTGTGGGTCAACCGTTCGCGCCGGGG
GGCGCTGCCGCGCTCCGCCTCCGGCCGCTGGGCCGGTGCCAAAGAGCGCGAACACGCCCGGCGCACCGCCCGGCGTCAGC
AGGAGCAGCGGGCCAAGAACAAAGTCGCCCTGCAGATCAACCCCGGTGGGCGGGGCGAGCGAGTGATCCCCGTACCGCAT
GCCGAACGGGGTGTGCTGGTGATGGGCCAACCGGGTTCGGGCAAAACCTACTCGGCCATCGACCCGCTCATTCGCTCCGC
ACTGCGCCAGGGCTTTCCGCTGGTGCTGTACGACTTTAAGTACCCCACCCAGACCCGGCGGTTGTTTGCCTACGCCCGGC
ATCTGGGCTACACCGTCCAGGTCTTTGCCCCGGGATTGCCCCAATCCGCCGTGTTCAATCCTTTGGATCTTCTCGTCTCC
GCCGAGGACAGCGAGACGGCCCGCCAGCTGGCCGAGGTACTCAACCGCAACTTCAAGCTTGCACAGCAAAAAGGGGGGGA
GGACGCTTTTTTTGGTCCGGCGGGCGATCAGCTGGCCGAGGCGGTGCTGCTCACGGCCAAAGCGAGCCCCTACCCGGATC
TATTGATGGTGCAATCGCTATTGAGTCTCGACCAGTTGCCCCAGCGCCTGCAGACAGCCGAGCACCTTTCCAGTTGGGTC
AAAGCCTCCTACGGCCAGTTCTTGAGTGCGGCCAGTTCCGAAAAAACGGCTGCGTCGATCGTGGCTACTGCAAGCGCTCT
ATTTACACGCTTTCTCAAGCCCCAGGTGGCTCGCAGCTTCGCAGGGCCGAGCGCCATCGACTTTGATCTCTCGGGCAAGA
AGCTGTTGGTGCTGGGGGTGGATCGCACCCGCCGCGACGTGGTGCTGCCTTTGGTGGCTACCCTGCTGCACATGCTCATT
CAGTTCAACACCCACGAGCGGCGCACCGAACCGCTCGTGCTTGCCCTCGACGAGTTACCGACTTTGTTTTTGCCGGCTCT
TGTCAACTGGCTCAACGAAAACCGCGAGGACGGGCTGGTGAGCGTGCTTGGTCTGCAAAACCTGGCCCAATTGGAGCGCA
CCTACGGCAAAGAAACCGCCCAGGCGATCTTCGGCGCCTGCGCCACCAAGTTTTTGTTCAATCCCGGCGAGAAAGATTCC
GCCCAGTACATCTCCGACATGCTGGGCCAGGAATCGATACTCCAGCGCTCGATCAGCCGCAACACCGGCAAGGGCGGCCC
CTCGCGCACCCACTCCGAAAGCGAGAAGACTCGGCCGCTTCTGGAGGCGAGCGGCCTGCTCAAACTCGGCCAGGGCCACT
GCATTTTACTCAACCCCGAGTACGGCAGCGGCAAAGAGTCCGGGGTGCCGATGCGCCTCGCCGTCCGACTTGATCCGGGT
GAAATGGCGATAGCCGAACTGGCCGAAAAGCTCTGGTCCACTCAGCAGCCGGAACTGCTCACCAATTCGCCGCCCGTCAG
TGCCCAGTCCCTGGCAGAGCGTCAGGCGTCGGCGGAACAATTTTTGCCCCTCGCCCCAGCTGACGCCTCCACAGTACGAT
CCGTGCCGCTGTTTTAG

Upstream 100 bases:

>100_bases
GACGACCTTGTTTGACTTTGGATGTACCCCGTATTTTCTGGGTCCCATCCCCTGGATTCCGAGCCAGGAAAAAGCGCTGA
CCTTCGTGGGACCTTAGAGC

Downstream 100 bases:

>100_bases
TCCTGGCCTGCAAGCCAGCTGTCCAAATCTGAAATGGATGCAAAATCCAGCAGCGCTTCGCTCAAGGCTTCGAGAGCAGT
CGTGGAGAGGCCACTCACCC

Product: hypothetical protein

Products: NA

Alternate protein names: Type IV Secretory Pathway VirD4 Component; Type IV Secretory Pathway VirD4 Components-Like Protein; Mobilisation Protein C; TraG/TraD Family Protein; Trag/Trad Family Protein; Transfer Complex Protein TrsK; Transfer Complex Protein TrsK-Like Protein; Plasmid Transfer Factor TraK; Type IV Secretory Pathway VirD4 Protein-Like Protein; TraG Family Mobilization Protein; TRAG Protein; Conjugal Transfer Protein TraG; Component Of Type IV Secretion System; Mobilization Protein; TraG Protein; ATPase Involved In Conjugal Plasmid Transfer

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MENDWTNYALLAGLGAAALWVNRSRRGALPRSASGRWAGAKEREHARRTARRQQEQRAKNKVALQINPGGRGERVIPVPH
AERGVLVMGQPGSGKTYSAIDPLIRSALRQGFPLVLYDFKYPTQTRRLFAYARHLGYTVQVFAPGLPQSAVFNPLDLLVS
AEDSETARQLAEVLNRNFKLAQQKGGEDAFFGPAGDQLAEAVLLTAKASPYPDLLMVQSLLSLDQLPQRLQTAEHLSSWV
KASYGQFLSAASSEKTAASIVATASALFTRFLKPQVARSFAGPSAIDFDLSGKKLLVLGVDRTRRDVVLPLVATLLHMLI
QFNTHERRTEPLVLALDELPTLFLPALVNWLNENREDGLVSVLGLQNLAQLERTYGKETAQAIFGACATKFLFNPGEKDS
AQYISDMLGQESILQRSISRNTGKGGPSRTHSESEKTRPLLEASGLLKLGQGHCILLNPEYGSGKESGVPMRLAVRLDPG
EMAIAELAEKLWSTQQPELLTNSPPVSAQSLAERQASAEQFLPLAPADASTVRSVPLF

Sequences:

>Translated_538_residues
MENDWTNYALLAGLGAAALWVNRSRRGALPRSASGRWAGAKEREHARRTARRQQEQRAKNKVALQINPGGRGERVIPVPH
AERGVLVMGQPGSGKTYSAIDPLIRSALRQGFPLVLYDFKYPTQTRRLFAYARHLGYTVQVFAPGLPQSAVFNPLDLLVS
AEDSETARQLAEVLNRNFKLAQQKGGEDAFFGPAGDQLAEAVLLTAKASPYPDLLMVQSLLSLDQLPQRLQTAEHLSSWV
KASYGQFLSAASSEKTAASIVATASALFTRFLKPQVARSFAGPSAIDFDLSGKKLLVLGVDRTRRDVVLPLVATLLHMLI
QFNTHERRTEPLVLALDELPTLFLPALVNWLNENREDGLVSVLGLQNLAQLERTYGKETAQAIFGACATKFLFNPGEKDS
AQYISDMLGQESILQRSISRNTGKGGPSRTHSESEKTRPLLEASGLLKLGQGHCILLNPEYGSGKESGVPMRLAVRLDPG
EMAIAELAEKLWSTQQPELLTNSPPVSAQSLAERQASAEQFLPLAPADASTVRSVPLF
>Mature_538_residues
MENDWTNYALLAGLGAAALWVNRSRRGALPRSASGRWAGAKEREHARRTARRQQEQRAKNKVALQINPGGRGERVIPVPH
AERGVLVMGQPGSGKTYSAIDPLIRSALRQGFPLVLYDFKYPTQTRRLFAYARHLGYTVQVFAPGLPQSAVFNPLDLLVS
AEDSETARQLAEVLNRNFKLAQQKGGEDAFFGPAGDQLAEAVLLTAKASPYPDLLMVQSLLSLDQLPQRLQTAEHLSSWV
KASYGQFLSAASSEKTAASIVATASALFTRFLKPQVARSFAGPSAIDFDLSGKKLLVLGVDRTRRDVVLPLVATLLHMLI
QFNTHERRTEPLVLALDELPTLFLPALVNWLNENREDGLVSVLGLQNLAQLERTYGKETAQAIFGACATKFLFNPGEKDS
AQYISDMLGQESILQRSISRNTGKGGPSRTHSESEKTRPLLEASGLLKLGQGHCILLNPEYGSGKESGVPMRLAVRLDPG
EMAIAELAEKLWSTQQPELLTNSPPVSAQSLAERQASAEQFLPLAPADASTVRSVPLF

Specific function: Trad Is A Cell Envelope Protein. The Function Of Trad Is Unknown But It Is Essential For DNA Transfer. It May Form Or May Be Part Of A Non-Specific Pore For DNA Export, Or It May Directly Energizes DNA Transport. [C]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58705; Mature: 58705

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENDWTNYALLAGLGAAALWVNRSRRGALPRSASGRWAGAKEREHARRTARRQQEQRAKN
CCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
KVALQINPGGRGERVIPVPHAERGVLVMGQPGSGKTYSAIDPLIRSALRQGFPLVLYDFK
CEEEEECCCCCCCEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
YPTQTRRLFAYARHLGYTVQVFAPGLPQSAVFNPLDLLVSAEDSETARQLAEVLNRNFKL
CCHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHEEECCCHHHHHHHHHHHCCCCCH
AQQKGGEDAFFGPAGDQLAEAVLLTAKASPYPDLLMVQSLLSLDQLPQRLQTAEHLSSWV
HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KASYGQFLSAASSEKTAASIVATASALFTRFLKPQVARSFAGPSAIDFDLSGKKLLVLGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEC
DRTRRDVVLPLVATLLHMLIQFNTHERRTEPLVLALDELPTLFLPALVNWLNENREDGLV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHH
SVLGLQNLAQLERTYGKETAQAIFGACATKFLFNPGEKDSAQYISDMLGQESILQRSISR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHC
NTGKGGPSRTHSESEKTRPLLEASGLLKLGQGHCILLNPEYGSGKESGVPMRLAVRLDPG
CCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCCCCCCEEEEEEECCH
EMAIAELAEKLWSTQQPELLTNSPPVSAQSLAERQASAEQFLPLAPADASTVRSVPLF
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MENDWTNYALLAGLGAAALWVNRSRRGALPRSASGRWAGAKEREHARRTARRQQEQRAKN
CCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
KVALQINPGGRGERVIPVPHAERGVLVMGQPGSGKTYSAIDPLIRSALRQGFPLVLYDFK
CEEEEECCCCCCCEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
YPTQTRRLFAYARHLGYTVQVFAPGLPQSAVFNPLDLLVSAEDSETARQLAEVLNRNFKL
CCHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCHHHHEEECCCHHHHHHHHHHHCCCCCH
AQQKGGEDAFFGPAGDQLAEAVLLTAKASPYPDLLMVQSLLSLDQLPQRLQTAEHLSSWV
HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KASYGQFLSAASSEKTAASIVATASALFTRFLKPQVARSFAGPSAIDFDLSGKKLLVLGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEC
DRTRRDVVLPLVATLLHMLIQFNTHERRTEPLVLALDELPTLFLPALVNWLNENREDGLV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHH
SVLGLQNLAQLERTYGKETAQAIFGACATKFLFNPGEKDSAQYISDMLGQESILQRSISR
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHC
NTGKGGPSRTHSESEKTRPLLEASGLLKLGQGHCILLNPEYGSGKESGVPMRLAVRLDPG
CCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCCCCCCEEEEEEECCH
EMAIAELAEKLWSTQQPELLTNSPPVSAQSLAERQASAEQFLPLAPADASTVRSVPLF
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA