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The map label for this gene is apcF [H]

Identifier: 37521499

GI number: 37521499

Start: 2052885

End: 2053370

Strand: Direct

Name: apcF [H]

Synonym: gvip267

Alternate gene names: 37521499

Gene position: 2052885-2053370 (Clockwise)

Preceding gene: 37521498

Following gene: 37521501

Centisome position: 44.06

GC content: 61.93

Gene sequence:

>486_bases
ATGAAAGACGCCATCAGCACGGTCATCGCCAAGTACGACTCCCAGGGCAAATACTTCGATAACGCCGCGGTCGATCAGCT
CAAAGCCTACTTTGCGACCGGTGAACTGCGGGTGCGCTCGGCGGCGGCGATCAGCGCCAACGCCCAATCGATCATCAAAG
AAGCGACCGCCAAGGCATTGCTCTACAGCAGCCTGACGCGCACCGGCGGCAACATGTACTACGCCCGCCGCTTCGCCGCC
TGCATCCGCGACATGGAGTACTTCCTGCGCTACGCGACTTTTGCGATGGTGGCCGGCGACACCAGCCTGCTCGACGAGTA
CGTTCTCAATGGTCTCAAGGAGACCTACACCTCTTTGGGCGTGCCGATCGACGCTACCGTCAAGGGTATCAACGCCCTGC
GCGAGGTGGTGGCTTCGGTAGTCGGGCCGGAGGCGGCGGGCGAAGCGAGCAAGTACTTCGACCACCTGGCGAAGGGCCTG
CAGTAA

Upstream 100 bases:

>100_bases
CGACCGGGTGAAAATCGAATTTGTCGGTCCCGGCGCGTTCTTGAATCCGCAATAGGGGTTACACTCGTGCGCAGGAGAAC
CTGTTCAGCACCACTGACAT

Downstream 100 bases:

>100_bases
CTTCAGGGCTGTTTCACCGCCGCCTGCGGTGTGGGCGGCAAATTACCTTTGGAACTGATACAGCACGTTCGTCTTGTCGC
CTGTCACGTAGACGGTGCCG

Product: phycobilisome core component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKDAISTVIAKYDSQGKYFDNAAVDQLKAYFATGELRVRSAAAISANAQSIIKEATAKALLYSSLTRTGGNMYYARRFAA
CIRDMEYFLRYATFAMVAGDTSLLDEYVLNGLKETYTSLGVPIDATVKGINALREVVASVVGPEAAGEASKYFDHLAKGL
Q

Sequences:

>Translated_161_residues
MKDAISTVIAKYDSQGKYFDNAAVDQLKAYFATGELRVRSAAAISANAQSIIKEATAKALLYSSLTRTGGNMYYARRFAA
CIRDMEYFLRYATFAMVAGDTSLLDEYVLNGLKETYTSLGVPIDATVKGINALREVVASVVGPEAAGEASKYFDHLAKGL
Q
>Mature_161_residues
MKDAISTVIAKYDSQGKYFDNAAVDQLKAYFATGELRVRSAAAISANAQSIIKEATAKALLYSSLTRTGGNMYYARRFAA
CIRDMEYFLRYATFAMVAGDTSLLDEYVLNGLKETYTSLGVPIDATVKGINALREVVASVVGPEAAGEASKYFDHLAKGL
Q

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006245
- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17434; Mature: 17434

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAISTVIAKYDSQGKYFDNAAVDQLKAYFATGELRVRSAAAISANAQSIIKEATAKAL
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LYSSLTRTGGNMYYARRFAACIRDMEYFLRYATFAMVAGDTSLLDEYVLNGLKETYTSLG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
VPIDATVKGINALREVVASVVGPEAAGEASKYFDHLAKGLQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDAISTVIAKYDSQGKYFDNAAVDQLKAYFATGELRVRSAAAISANAQSIIKEATAKAL
CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LYSSLTRTGGNMYYARRFAACIRDMEYFLRYATFAMVAGDTSLLDEYVLNGLKETYTSLG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
VPIDATVKGINALREVVASVVGPEAAGEASKYFDHLAKGLQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3031427; 3782095 [H]