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The map label for this gene is petJ [H]

Identifier: 37521475

GI number: 37521475

Start: 2027275

End: 2027613

Strand: Direct

Name: petJ [H]

Synonym: gvip260

Alternate gene names: 37521475

Gene position: 2027275-2027613 (Clockwise)

Preceding gene: 37521473

Following gene: 37521478

Centisome position: 43.51

GC content: 60.47

Gene sequence:

>339_bases
ATGCGGTGGGTGTGGACAGTGGGGGCAGTGAGCATTTCGGTGCTGGGAGCGGGGGTGATCCTGGCCGAGGCACAGCCGGA
TCTAGCGGCGGGAGAGAAGATCTTCAAAGCCAACTGTGCGGCTTGCCACGCCGGGGGGAACAATATCGTGGAGCCGGAGA
AGACGCTCAAAAAGGAGGCGCTCGCTCACTTCGGGATGGGTTCGCCAGCGGCGATTATCCAGCAAGTCACCGGCGGCAAA
AACGCCATGCCTGCCTTTGGGGGTGAACTGAGCACCGAGGAGATCCGGCAGGTGGCTTCCTACGTGCTGGAGATGGCAGA
TAAAGACTGGCAGAAATAA

Upstream 100 bases:

>100_bases
GATACCTGCCATACGCCACCTCAAGAAAAATGAAAAGATTGTGAAAAATCTTAATATATGAGATACCAGAGCAAAGGGCG
CGCGTCAAGGGAGCAGGGCG

Downstream 100 bases:

>100_bases
AGCAAATCCGCTCAGAGAAGCGCTTCCGGGTCGATGCCGCGCTCGCGCAGCAATTCGGCGAGGCGCTCGGCCCGTCGCTC
GGCTTCCAGGCGTGCCGAGC

Product: cytochrome c553

Products: NA

Alternate protein names: Cytochrome c-553; Cytochrome c553; Soluble cytochrome f [H]

Number of amino acids: Translated: 112; Mature: 112

Protein sequence:

>112_residues
MRWVWTVGAVSISVLGAGVILAEAQPDLAAGEKIFKANCAACHAGGNNIVEPEKTLKKEALAHFGMGSPAAIIQQVTGGK
NAMPAFGGELSTEEIRQVASYVLEMADKDWQK

Sequences:

>Translated_112_residues
MRWVWTVGAVSISVLGAGVILAEAQPDLAAGEKIFKANCAACHAGGNNIVEPEKTLKKEALAHFGMGSPAAIIQQVTGGK
NAMPAFGGELSTEEIRQVASYVLEMADKDWQK
>Mature_112_residues
MRWVWTVGAVSISVLGAGVILAEAQPDLAAGEKIFKANCAACHAGGNNIVEPEKTLKKEALAHFGMGSPAAIIQQVTGGK
NAMPAFGGELSTEEIRQVASYVLEMADKDWQK

Specific function: Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 11798; Mature: 11798

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS51007 CYTC ; PS01047 HMA_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWVWTVGAVSISVLGAGVILAEAQPDLAAGEKIFKANCAACHAGGNNIVEPEKTLKKEA
CCEEEEHHHHHHHHHHCCEEEECCCCCCHHCHHHHHCCCCEEECCCCCCCCCHHHHHHHH
LAHFGMGSPAAIIQQVTGGKNAMPAFGGELSTEEIRQVASYVLEMADKDWQK
HHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRWVWTVGAVSISVLGAGVILAEAQPDLAAGEKIFKANCAACHAGGNNIVEPEKTLKKEA
CCEEEEHHHHHHHHHHCCEEEECCCCCCHHCHHHHHCCCCEEECCCCCCCCCHHHHHHHH
LAHFGMGSPAAIIQQVTGGKNAMPAFGGELSTEEIRQVASYVLEMADKDWQK
HHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]