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The map label for this gene is yfjD [C]

Identifier: 37521402

GI number: 37521402

Start: 1951406

End: 1952704

Strand: Direct

Name: yfjD [C]

Synonym: glr1833

Alternate gene names: 37521402

Gene position: 1951406-1952704 (Clockwise)

Preceding gene: 37521401

Following gene: 37521403

Centisome position: 41.88

GC content: 64.74

Gene sequence:

>1299_bases
ATGGACTCGCTGGCAGTACAGCTCGGCCTGGTTTTTTTACTCATTGCAGCCAACGCCTTTTTTGCTGCGGCGGAGATCGC
CCTGGTGTCGATCAACCGGGCACGGCTGCAGGTGCTCATCGACGCGGGCAACCGCCGCGCCCGCCTGGTCGAGAAGCTCA
GCGACGACAGCACCCGCTTTTTGGCCACCATCCAGGTCGGGGTGACTTTTGCGAGTTTTTTCACCTCCGCGACCGCCGCG
GTGCAGCTGTCTGCACCCCTCGCCGCACTGCTGGTGCCACGGGTCGGTCCCTGGGGCGAGCAGCTGGCGTTTTTTGTGGT
GACGGCGGCGGTTTCACTGCTGAGCTTGATTTTGGGCGAGCTTGTCCCCAAGCGCATCGCCTTGGGGTCGGCGGAGGCGG
TGGCCCTCGCCGTCGCCTACCCGATCGACTGGTTGGCTCGGGTCAGCTCGCCGCTGGTGCGCTTGCTGAGCGGGGTAACG
GATCTGATCGTGCGCCTGAGCGGCCAGAACAAGTTGCCGTCGGAGGTGGGCATCACCCTGGCTGAGATCAAAAGCACCAT
CGACCTGGCGGAGGAGTCCGGGACGGTGGGCGAGCAGGAGCGGCGGATCATCTACGGCGCGGTGGCGCTCAACACCCGGC
CGGTGCGCACGCTGATGGTGCCGCGCGTGCAACTGGTGAGCATTTCGGCAAACGCCAGCATCCCGGAGGCGCGTTCGATT
GCCGCCCAGTCGGGTCACACCCGTCTGCCGGTCTATATCGAGACCATCGACACGATCATCGGCATCTTGCACGCCAAGGA
TTTGCTCGCCCTCAACCCGCAGCAGGAGGCGACCCTCGCCGTGCGCGAAATCGCCCGACCGGTGCAGTTCGTACCCGACA
GCAAGCTCGCAGGCGGTCTGCTGCGGGAGATGCAGTTGCAGCGCACCCATCTGGTGGTGGTGGTGGACGAGTACGGCGGC
ACGGCGGGGGTGGTCACCCTCGAAGATTTGCTCGAAGAAATCGTGGGCGAAATCCGCGACGAGTACGACGCCGAGGAAGA
AACGGAGTACGAGCGACTTGAGGACGGTTCGGGGATCTTTCTGGCGCGCACGAGCATCGCCACGGTCAACAATGTCCTCG
ACTTCGAACTGCCGCGCGACAGCGCCCTCACCCTGCGCGGTCTGATGGAGGCGGCGTTGGAACGCGCCCCCAAAGAGGGC
GAGCGCGTCGAAGTCGACCGCTTCGAACTGGAATTATTGCCCGACGGCCAGCGCATCACCGTGCGCGCCCTGCCGGAACC
CGAGCAAGAAGAAGCATAA

Upstream 100 bases:

>100_bases
CCCGGTGCTGCTGCAAAAGACCGCCGAGTAAATTCACCCGCTCCGCGACCGCTGCGCTAAGCGCCTATGATCAGAACAGG
CCCCACTTCGTTGCCTTTTG

Downstream 100 bases:

>100_bases
AAGCCCCGATCGATGCCATCCGAACCGGCCGCCAGACCCGTACACCAACTGCCGCGGAGAGAGGCAACCCGATTGCTGCT
CCCGACTCGCAGCAGGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MDSLAVQLGLVFLLIAANAFFAAAEIALVSINRARLQVLIDAGNRRARLVEKLSDDSTRFLATIQVGVTFASFFTSATAA
VQLSAPLAALLVPRVGPWGEQLAFFVVTAAVSLLSLILGELVPKRIALGSAEAVALAVAYPIDWLARVSSPLVRLLSGVT
DLIVRLSGQNKLPSEVGITLAEIKSTIDLAEESGTVGEQERRIIYGAVALNTRPVRTLMVPRVQLVSISANASIPEARSI
AAQSGHTRLPVYIETIDTIIGILHAKDLLALNPQQEATLAVREIARPVQFVPDSKLAGGLLREMQLQRTHLVVVVDEYGG
TAGVVTLEDLLEEIVGEIRDEYDAEEETEYERLEDGSGIFLARTSIATVNNVLDFELPRDSALTLRGLMEAALERAPKEG
ERVEVDRFELELLPDGQRITVRALPEPEQEEA

Sequences:

>Translated_432_residues
MDSLAVQLGLVFLLIAANAFFAAAEIALVSINRARLQVLIDAGNRRARLVEKLSDDSTRFLATIQVGVTFASFFTSATAA
VQLSAPLAALLVPRVGPWGEQLAFFVVTAAVSLLSLILGELVPKRIALGSAEAVALAVAYPIDWLARVSSPLVRLLSGVT
DLIVRLSGQNKLPSEVGITLAEIKSTIDLAEESGTVGEQERRIIYGAVALNTRPVRTLMVPRVQLVSISANASIPEARSI
AAQSGHTRLPVYIETIDTIIGILHAKDLLALNPQQEATLAVREIARPVQFVPDSKLAGGLLREMQLQRTHLVVVVDEYGG
TAGVVTLEDLLEEIVGEIRDEYDAEEETEYERLEDGSGIFLARTSIATVNNVLDFELPRDSALTLRGLMEAALERAPKEG
ERVEVDRFELELLPDGQRITVRALPEPEQEEA
>Mature_432_residues
MDSLAVQLGLVFLLIAANAFFAAAEIALVSINRARLQVLIDAGNRRARLVEKLSDDSTRFLATIQVGVTFASFFTSATAA
VQLSAPLAALLVPRVGPWGEQLAFFVVTAAVSLLSLILGELVPKRIALGSAEAVALAVAYPIDWLARVSSPLVRLLSGVT
DLIVRLSGQNKLPSEVGITLAEIKSTIDLAEESGTVGEQERRIIYGAVALNTRPVRTLMVPRVQLVSISANASIPEARSI
AAQSGHTRLPVYIETIDTIIGILHAKDLLALNPQQEATLAVREIARPVQFVPDSKLAGGLLREMQLQRTHLVVVVDEYGG
TAGVVTLEDLLEEIVGEIRDEYDAEEETEYERLEDGSGIFLARTSIATVNNVLDFELPRDSALTLRGLMEAALERAPKEG
ERVEVDRFELELLPDGQRITVRALPEPEQEEA

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=377, Percent_Identity=27.5862068965517, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI40068055, Length=356, Percent_Identity=23.0337078651685, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI40068053, Length=356, Percent_Identity=23.0337078651685, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI94681046, Length=340, Percent_Identity=24.7058823529412, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=25.3768844221106, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1790664, Length=418, Percent_Identity=27.0334928229665, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786879, Length=229, Percent_Identity=32.7510917030568, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87082033, Length=219, Percent_Identity=31.5068493150685, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788119, Length=271, Percent_Identity=28.4132841328413, Blast_Score=82, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71980512, Length=367, Percent_Identity=25.0681198910082, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46734; Mature: 46734

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLAVQLGLVFLLIAANAFFAAAEIALVSINRARLQVLIDAGNRRARLVEKLSDDSTRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEEECCCHHHHHHHHHCCCCCEE
LATIQVGVTFASFFTSATAAVQLSAPLAALLVPRVGPWGEQLAFFVVTAAVSLLSLILGE
EEEEEHHHHHHHHHHHHHHEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LVPKRIALGSAEAVALAVAYPIDWLARVSSPLVRLLSGVTDLIVRLSGQNKLPSEVGITL
HHHHHHCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCH
AEIKSTIDLAEESGTVGEQERRIIYGAVALNTRPVRTLMVPRVQLVSISANASIPEARSI
HHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHCCCCEEEEEEECCCCCCHHHHH
AAQSGHTRLPVYIETIDTIIGILHAKDLLALNPQQEATLAVREIARPVQFVPDSKLAGGL
HHCCCCCCCCEEHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCCHHHHHH
LREMQLQRTHLVVVVDEYGGTAGVVTLEDLLEEIVGEIRDEYDAEEETEYERLEDGSGIF
HHHHHHCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEE
LARTSIATVNNVLDFELPRDSALTLRGLMEAALERAPKEGERVEVDRFELELLPDGQRIT
EEECHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCEEE
VRALPEPEQEEA
EEECCCCCCCCC
>Mature Secondary Structure
MDSLAVQLGLVFLLIAANAFFAAAEIALVSINRARLQVLIDAGNRRARLVEKLSDDSTRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEEEECCCHHHHHHHHHCCCCCEE
LATIQVGVTFASFFTSATAAVQLSAPLAALLVPRVGPWGEQLAFFVVTAAVSLLSLILGE
EEEEEHHHHHHHHHHHHHHEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LVPKRIALGSAEAVALAVAYPIDWLARVSSPLVRLLSGVTDLIVRLSGQNKLPSEVGITL
HHHHHHCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHCCCH
AEIKSTIDLAEESGTVGEQERRIIYGAVALNTRPVRTLMVPRVQLVSISANASIPEARSI
HHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHHCCCCEEEEEEECCCCCCHHHHH
AAQSGHTRLPVYIETIDTIIGILHAKDLLALNPQQEATLAVREIARPVQFVPDSKLAGGL
HHCCCCCCCCEEHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCCCCCHHHHHH
LREMQLQRTHLVVVVDEYGGTAGVVTLEDLLEEIVGEIRDEYDAEEETEYERLEDGSGIF
HHHHHHCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEE
LARTSIATVNNVLDFELPRDSALTLRGLMEAALERAPKEGERVEVDRFELELLPDGQRIT
EEECHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCEEE
VRALPEPEQEEA
EEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]