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The map label for this gene is pys [H]

Identifier: 37521313

GI number: 37521313

Start: 1847232

End: 1848185

Strand: Direct

Name: pys [H]

Synonym: gvip241

Alternate gene names: 37521313

Gene position: 1847232-1848185 (Clockwise)

Preceding gene: 37521310

Following gene: 37521314

Centisome position: 39.65

GC content: 58.7

Gene sequence:

>954_bases
ATGTGGTCAGTATGGAAGGTGTGCTCCTCTCCGGTAAGCTATGTGCTGGTGCACTCACCGGATCTTTCGCCAACCGCTCT
GCCACGGTCCATGCTTGCTAGAGACAAGTCCCTGGAATCTTACGAGGCCTGCCGCCAGTTAACGGCGGAGTACTCCAAAA
CGTTCTACTTCGCCTCGCTGCTGTTTCCCATGGAGAAGCGCCGGGCGATCTGGGCGATTTATGCCTGGTGCCGCCGCACC
GACGAGTTGGTGGACAGCCTTGACTTCAAGGCGGACCCGCGGATGCTCGACCGCTGGCAGGAGCGTCTGGATAAAATTTT
TGGCGGTGGGGGCGAGGACGTTTATGATCTGGCTCTCGCAGACGCGGTGCGCAATTTTCCTCTAGAGATTCGACCTTTCC
TCGACATGATCGAAGGCATGCGCATGGACCTCACCCAGGCTCGCTACGAGAACTGGGAGGAGCTGCATACCTATTGCTAC
CGGGTGGCGGGCACGGTCGGGCTGATGTCCTGTGCGGTCATGGGATTGGTAGATGATTGTCCGGAGGCACGCAGGCGGGC
TGTCGCCCTCGGGGTTGCCAAGCAGATGACCAACATTTTGCGCGATGTCGGCGAGGACGCCCGGCGCGGCCGAATCTATC
TGCCGCTGGAGGATCTGCGCAAGTTCGGCTATTCGGAGGAAGACCTGTTTGCTTATGTGGTCGACGAGCGCTGGGCAGCG
TTGATGGAATTTGAAATTGCCCGTGCCGAGGCAATTTATCTAGAAGCCGAAAAAGGCATCCCGTACTTGATCCCCGATGC
CCGATGGCCGGTGTGGGCCTCGCTGATTCTCTACCGGCGCATCCTGACCAAGGTGCGCTCCAACGGCTATCAAAATTTTT
TACAAAGGGCCTATGTGCCCCGCGCCGAGAAGTTTCTGCTGCTGCCGGTCGCCTGGGCAAAGGCCCAGACATGA

Upstream 100 bases:

>100_bases
ACCGACCGTCGATTTACATCTATCGTGCTTGCACCTGGAGGTATTCCTGGGCAGCCGTTTGCCGATTTCTCACTAGAGGG
CGGTTTTACCAAACGAGTCG

Downstream 100 bases:

>100_bases
AGGGGGCTTCCAGGGCAAGGCCCCTGAGCCTCAGTCCTACGGCGCTCAAGCTCTACGTGCGCTGTGCCTACGCCTACGCC
CTTGACAAGATCGTCAAAGT

Product: phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MWSVWKVCSSPVSYVLVHSPDLSPTALPRSMLARDKSLESYEACRQLTAEYSKTFYFASLLFPMEKRRAIWAIYAWCRRT
DELVDSLDFKADPRMLDRWQERLDKIFGGGGEDVYDLALADAVRNFPLEIRPFLDMIEGMRMDLTQARYENWEELHTYCY
RVAGTVGLMSCAVMGLVDDCPEARRRAVALGVAKQMTNILRDVGEDARRGRIYLPLEDLRKFGYSEEDLFAYVVDERWAA
LMEFEIARAEAIYLEAEKGIPYLIPDARWPVWASLILYRRILTKVRSNGYQNFLQRAYVPRAEKFLLLPVAWAKAQT

Sequences:

>Translated_317_residues
MWSVWKVCSSPVSYVLVHSPDLSPTALPRSMLARDKSLESYEACRQLTAEYSKTFYFASLLFPMEKRRAIWAIYAWCRRT
DELVDSLDFKADPRMLDRWQERLDKIFGGGGEDVYDLALADAVRNFPLEIRPFLDMIEGMRMDLTQARYENWEELHTYCY
RVAGTVGLMSCAVMGLVDDCPEARRRAVALGVAKQMTNILRDVGEDARRGRIYLPLEDLRKFGYSEEDLFAYVVDERWAA
LMEFEIARAEAIYLEAEKGIPYLIPDARWPVWASLILYRRILTKVRSNGYQNFLQRAYVPRAEKFLLLPVAWAKAQT
>Mature_317_residues
MWSVWKVCSSPVSYVLVHSPDLSPTALPRSMLARDKSLESYEACRQLTAEYSKTFYFASLLFPMEKRRAIWAIYAWCRRT
DELVDSLDFKADPRMLDRWQERLDKIFGGGGEDVYDLALADAVRNFPLEIRPFLDMIEGMRMDLTQARYENWEELHTYCY
RVAGTVGLMSCAVMGLVDDCPEARRRAVALGVAKQMTNILRDVGEDARRGRIYLPLEDLRKFGYSEEDLFAYVVDERWAA
LMEFEIARAEAIYLEAEKGIPYLIPDARWPVWASLILYRRILTKVRSNGYQNFLQRAYVPRAEKFLLLPVAWAKAQT

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 36823; Mature: 36823

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1 ; PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSVWKVCSSPVSYVLVHSPDLSPTALPRSMLARDKSLESYEACRQLTAEYSKTFYFASL
CCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LFPMEKRRAIWAIYAWCRRTDELVDSLDFKADPRMLDRWQERLDKIFGGGGEDVYDLALA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
DAVRNFPLEIRPFLDMIEGMRMDLTQARYENWEELHTYCYRVAGTVGLMSCAVMGLVDDC
HHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PEARRRAVALGVAKQMTNILRDVGEDARRGRIYLPLEDLRKFGYSEEDLFAYVVDERWAA
HHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHH
LMEFEIARAEAIYLEAEKGIPYLIPDARWPVWASLILYRRILTKVRSNGYQNFLQRAYVP
HHHHHHHHHHEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
RAEKFLLLPVAWAKAQT
CCCCEEEEEEHHCCCCC
>Mature Secondary Structure
MWSVWKVCSSPVSYVLVHSPDLSPTALPRSMLARDKSLESYEACRQLTAEYSKTFYFASL
CCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LFPMEKRRAIWAIYAWCRRTDELVDSLDFKADPRMLDRWQERLDKIFGGGGEDVYDLALA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
DAVRNFPLEIRPFLDMIEGMRMDLTQARYENWEELHTYCYRVAGTVGLMSCAVMGLVDDC
HHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PEARRRAVALGVAKQMTNILRDVGEDARRGRIYLPLEDLRKFGYSEEDLFAYVVDERWAA
HHHHHHHHHHHHHHHHHHHHHHHCHHHHCCEEEEEHHHHHHCCCCCHHHHHHHHHHHHHH
LMEFEIARAEAIYLEAEKGIPYLIPDARWPVWASLILYRRILTKVRSNGYQNFLQRAYVP
HHHHHHHHHHEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC
RAEKFLLLPVAWAKAQT
CCCCEEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8018713; 8905231 [H]