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The map label for this gene is ccdA [H]

Identifier: 37521288

GI number: 37521288

Start: 1828278

End: 1829006

Strand: Direct

Name: ccdA [H]

Synonym: gvip238

Alternate gene names: 37521288

Gene position: 1828278-1829006 (Clockwise)

Preceding gene: 37521287

Following gene: 37521289

Centisome position: 39.24

GC content: 62.55

Gene sequence:

>729_bases
GTGAGCGAAGCGTTGCAACTGTGGCTGTATCAGATCGAGCAGGGGGCCGAGCAACTGGCCAGGGCTCAGCTCACCCAGAT
TTCGCCCACCAGTTTTTTGCTGTTGTACCTGATTGGCCTCGCCACCAGTTTCACCCCCTGCATCCTCTCGATGCTGCCGG
TCACGATCGGCTACATCGGCGGCTACCAGTCGCGCTCGCGCTTCGAAGCGCTCGTGCAGTCCGGGTGGTTCGCCCTGGGT
CTCGCCGTCACCATTACCGGCCTCGGCCTGGTGGCCACGATACCGGGTATGCTCTACGGCCAGGTGGGGACCGGTTGGTT
CATCGCCATGGGCGCTTTGGCCATCTTAATGGGTTTCAACCTGCTTGGGCTCATTCCCCTGAGCCTGCCCCAGTGGGGCG
GCTTTGACCTTGCCAAGGACACCCCCCAGTCGCTCAAGTCGCTGGCCACCGGCGCCACCTTCGGCCTGGTGGCATCCCCC
TGCTCGACACCGGTGCTCATCGCACTACTAGCCTGGGTCTCCACCACCGGCAATCCGTGGGTAGGGGCGGGGCTGCTGTT
TTCTTACTCCATCGGCCACGCCACGCCGCTTATCCTGGCCGGAGCCTTTACCGGCGCCCTCAAGGCGATGCTCTCGCTGC
GCCGCTGGTCAGGTCTCATCAATCAGGTAAGCGGCATCCTGCTCATCTTCACCGGCACGCTTGCGATTTTGAATATTCTG
AATCGCTGA

Upstream 100 bases:

>100_bases
CCCAAGGCAGGTGCCCCCGCCGGCCAGACTTCAAAATTCACGCCACCCAAAAAAGTCGACCAGCCCCGCGATCACTCTTA
AGATTCCTAGCGAGCAAGCC

Downstream 100 bases:

>100_bases
GGGACCGCGGTGAGAGTTGCGCTGATCGGAGCAAAGTTACTGTTGGTACTGCTGTCTGCCCAGGTTGCGCATGCACAGAC
GGCTGCGTATCTCGGTGGCG

Product: putative c-type cytochrome biogenesis protein

Products: NA

Alternate protein names: Protein-disulfide reductase; Disulfide reductase [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSEALQLWLYQIEQGAEQLARAQLTQISPTSFLLLYLIGLATSFTPCILSMLPVTIGYIGGYQSRSRFEALVQSGWFALG
LAVTITGLGLVATIPGMLYGQVGTGWFIAMGALAILMGFNLLGLIPLSLPQWGGFDLAKDTPQSLKSLATGATFGLVASP
CSTPVLIALLAWVSTTGNPWVGAGLLFSYSIGHATPLILAGAFTGALKAMLSLRRWSGLINQVSGILLIFTGTLAILNIL
NR

Sequences:

>Translated_242_residues
MSEALQLWLYQIEQGAEQLARAQLTQISPTSFLLLYLIGLATSFTPCILSMLPVTIGYIGGYQSRSRFEALVQSGWFALG
LAVTITGLGLVATIPGMLYGQVGTGWFIAMGALAILMGFNLLGLIPLSLPQWGGFDLAKDTPQSLKSLATGATFGLVASP
CSTPVLIALLAWVSTTGNPWVGAGLLFSYSIGHATPLILAGAFTGALKAMLSLRRWSGLINQVSGILLIFTGTLAILNIL
NR
>Mature_241_residues
SEALQLWLYQIEQGAEQLARAQLTQISPTSFLLLYLIGLATSFTPCILSMLPVTIGYIGGYQSRSRFEALVQSGWFALGL
AVTITGLGLVATIPGMLYGQVGTGWFIAMGALAILMGFNLLGLIPLSLPQWGGFDLAKDTPQSLKSLATGATFGLVASPC
STPVLIALLAWVSTTGNPWVGAGLLFSYSIGHATPLILAGAFTGALKAMLSLRRWSGLINQVSGILLIFTGTLAILNILN
R

Specific function: Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1790578, Length=196, Percent_Identity=34.1836734693878, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834
- InterPro:   IPR022910
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR017937
- InterPro:   IPR013766
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02683 DsbD; PF00085 Thioredoxin [H]

EC number: =1.8.1.8 [H]

Molecular weight: Translated: 25536; Mature: 25404

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEALQLWLYQIEQGAEQLARAQLTQISPTSFLLLYLIGLATSFTPCILSMLPVTIGYIG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYQSRSRFEALVQSGWFALGLAVTITGLGLVATIPGMLYGQVGTGWFIAMGALAILMGFN
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LLGLIPLSLPQWGGFDLAKDTPQSLKSLATGATFGLVASPCSTPVLIALLAWVSTTGNPW
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCC
VGAGLLFSYSIGHATPLILAGAFTGALKAMLSLRRWSGLINQVSGILLIFTGTLAILNIL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NR
CC
>Mature Secondary Structure 
SEALQLWLYQIEQGAEQLARAQLTQISPTSFLLLYLIGLATSFTPCILSMLPVTIGYIG
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GYQSRSRFEALVQSGWFALGLAVTITGLGLVATIPGMLYGQVGTGWFIAMGALAILMGFN
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LLGLIPLSLPQWGGFDLAKDTPQSLKSLATGATFGLVASPCSTPVLIALLAWVSTTGNPW
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCC
VGAGLLFSYSIGHATPLILAGAFTGALKAMLSLRRWSGLINQVSGILLIFTGTLAILNIL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA