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The map label for this gene is psbA

Identifier: 37521275

GI number: 37521275

Start: 1816423

End: 1817505

Strand: Direct

Name: psbA

Synonym: gvip234

Alternate gene names: 37521275

Gene position: 1816423-1817505 (Clockwise)

Preceding gene: 37521274

Following gene: 37521276

Centisome position: 38.99

GC content: 58.82

Gene sequence:

>1083_bases
ATGGCAACCATATTGCGCCGCCGCTCCCTGGGCAATCCCTGGGAGCAGTTCGCCAACTGGATTACCTCCACCGACAACCG
CTTTTACATCGGCTGGTTCGGTGTACTCATGGTCCCGACGTTGCTTTCTGCGACGATCTGCTTCGTCGTCGCCTTTATCG
CCGCCCCACCCGTCGACATGGACGGCATCCGCGAGCCGATTTCCGGTTCGCTGCTGTACGGCAACAACATCATCACCGGC
GCGGTGATCCCGTCCTCCAACGCCATCGGCCTGCATTTTTATCCCATCTGGGAAGCGGCCAGCATGGACGAGTGGCTCTA
CAACGGCGGCCCCTACCAGTTGGTTGTGTTTCATTTTTTGATCGGCATTTTCGCCTACCTGGGCCGGGAGTGGGAATTTT
CCTATCGGCTGGGACTGCGCCCCTGGATCTGTGTCGCTTACTCGGCCCCAGTGGCCGCCGCCACCGCCGTGTTCTTGATC
TACCCAATGGGCCAAGGATCGTTTAGCGACGGGATGTCCTTGGGCATCTCCGGCACGTTCAATTTCATGTTCATCTTCCA
GGCCGAGCACAACATTCTCAATCACCCGCTGCACATGTTCGGGGTGGCCGGGGTATTCGGCGGCTCCCTGTTCGCCGCCA
TGCACGGCAGTCTGGTGACTTCATCGCTGATCAAAGCGACTTCCTACGAAGAGTCCCAGAACTACGGCTACAAGTTCGGA
CAGGAAGAAGAAACCTACAACATCGTCGCCGCCCACGGTTACTTCGGCCGCTTGATTTTTCAGTACGCCAGTTTCACCAA
CAGCCGCTCGCTGCACTTTTTCCTGGCGGCCTGGCCGGTGATTGGCATCTGGCTGACTTCCCTGGGCATCTGCGTCATGG
GTTTCAATCTCAACGGCTTCAACTTCAACGCCTCAATTACCGACAACCAGGGACGGACCATCTACACCTGGGCGGACATC
GTCAACCGCGCCAATCTGGGCATCGAAGTGATGCACGAGCGCAACGCCCATAACTTCCCCCTGGATCTGGCCGGGACGGA
GTCTGCTCCAGTGGCCTTCGCTGCAGCCCTGGGCGACGGCTGA

Upstream 100 bases:

>100_bases
ATCCACCCATTCCAATCTACCAAAAGATAGATGCGCGCCGAGCGAACCCATGTAGCTTTAGAAAGCACTGCAAAGCACTT
TTCTCACAGGGTTCGATACA

Downstream 100 bases:

>100_bases
ACCTCCTCGCTTAAACTTGAGCGGCACCGGCATCCTCAAATGTCGGTGCCGCTCAAGTCGGGAGCGCTTTGCGAGACAAC
CAGAAACGATCCGCCTGCTT

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 2; Photosystem II protein D1 2

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MATILRRRSLGNPWEQFANWITSTDNRFYIGWFGVLMVPTLLSATICFVVAFIAAPPVDMDGIREPISGSLLYGNNIITG
AVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGIFAYLGREWEFSYRLGLRPWICVAYSAPVAAATAVFLI
YPMGQGSFSDGMSLGISGTFNFMFIFQAEHNILNHPLHMFGVAGVFGGSLFAAMHGSLVTSSLIKATSYEESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFTNSRSLHFFLAAWPVIGIWLTSLGICVMGFNLNGFNFNASITDNQGRTIYTWADI
VNRANLGIEVMHERNAHNFPLDLAGTESAPVAFAAALGDG

Sequences:

>Translated_360_residues
MATILRRRSLGNPWEQFANWITSTDNRFYIGWFGVLMVPTLLSATICFVVAFIAAPPVDMDGIREPISGSLLYGNNIITG
AVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGIFAYLGREWEFSYRLGLRPWICVAYSAPVAAATAVFLI
YPMGQGSFSDGMSLGISGTFNFMFIFQAEHNILNHPLHMFGVAGVFGGSLFAAMHGSLVTSSLIKATSYEESQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFTNSRSLHFFLAAWPVIGIWLTSLGICVMGFNLNGFNFNASITDNQGRTIYTWADI
VNRANLGIEVMHERNAHNFPLDLAGTESAPVAFAAALGDG
>Mature_359_residues
ATILRRRSLGNPWEQFANWITSTDNRFYIGWFGVLMVPTLLSATICFVVAFIAAPPVDMDGIREPISGSLLYGNNIITGA
VIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGIFAYLGREWEFSYRLGLRPWICVAYSAPVAAATAVFLIY
PMGQGSFSDGMSLGISGTFNFMFIFQAEHNILNHPLHMFGVAGVFGGSLFAAMHGSLVTSSLIKATSYEESQNYGYKFGQ
EEETYNIVAAHGYFGRLIFQYASFTNSRSLHFFLAAWPVIGIWLTSLGICVMGFNLNGFNFNASITDNQGRTIYTWADIV
NRANLGIEVMHERNAHNFPLDLAGTESAPVAFAAALGDG

Specific function: This is one of the two reaction center proteins of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBA2_GLOVI (Q7NJX5)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924652.1
- HSSP:   P51765
- ProteinModelPortal:   Q7NJX5
- SMR:   Q7NJX5
- GeneID:   2598486
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.1706
- HOGENOM:   HBG284766
- OMA:   TEAESIN
- ProtClustDB:   CLSK892431
- BioCyc:   GVIO251221:GLR1706-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01379
- InterPro:   IPR000484
- InterPro:   IPR005867
- Gene3D:   G3DSA:1.20.85.10
- TIGRFAMs:   TIGR01151

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39721; Mature: 39590

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x13c34c50)-; HASH(0x13f3cc00)-; HASH(0x13eb62e8)-; HASH(0x139c9244)-; HASH(0x13dfa74c)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATILRRRSLGNPWEQFANWITSTDNRFYIGWFGVLMVPTLLSATICFVVAFIAAPPVDM
CCCHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DGIREPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFL
HHCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHH
IGIFAYLGREWEFSYRLGLRPWICVAYSAPVAAATAVFLIYPMGQGSFSDGMSLGISGTF
HHHHHHHCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCEEEECCEE
NFMFIFQAEHNILNHPLHMFGVAGVFGGSLFAAMHGSLVTSSLIKATSYEESQNYGYKFG
EEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFTNSRSLHFFLAAWPVIGIWLTSLGICVMGFNLNGF
CCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCCCE
NFNASITDNQGRTIYTWADIVNRANLGIEVMHERNAHNFPLDLAGTESAPVAFAAALGDG
EEEEEEECCCCCEEEEHHHHHCCCCCCEEEEECCCCCCCCEEECCCCCCCEEEEEECCCH
>Mature Secondary Structure 
ATILRRRSLGNPWEQFANWITSTDNRFYIGWFGVLMVPTLLSATICFVVAFIAAPPVDM
CCHHHHHCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DGIREPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFL
HHCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHH
IGIFAYLGREWEFSYRLGLRPWICVAYSAPVAAATAVFLIYPMGQGSFSDGMSLGISGTF
HHHHHHHCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCEEEECCEE
NFMFIFQAEHNILNHPLHMFGVAGVFGGSLFAAMHGSLVTSSLIKATSYEESQNYGYKFG
EEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QEEETYNIVAAHGYFGRLIFQYASFTNSRSLHFFLAAWPVIGIWLTSLGICVMGFNLNGF
CCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCCCE
NFNASITDNQGRTIYTWADIVNRANLGIEVMHERNAHNFPLDLAGTESAPVAFAAALGDG
EEEEEEECCCCCEEEEHHHHHCCCCCCEEEEECCCCCCCCEEECCCCCCCEEEEEECCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292