Click here to switch to the map view.

The map label for this gene is smpB

Identifier: 37521063

GI number: 37521063

Start: 1607520

End: 1607978

Strand: Reverse

Name: smpB

Synonym: gll1494

Alternate gene names: 37521063

Gene position: 1607978-1607520 (Counterclockwise)

Preceding gene: 37521064

Following gene: 37521062

Centisome position: 34.51

GC content: 60.35

Gene sequence:

>459_bases
ATGGCCGGCGAGAAGACCCGCAAAATACTAGTCGACAACCGCAAGGCCCGCTTCGAGTACGAGATTCTGGAGACCTATTC
AGCGGGGCTCGCCCTGTTGGGTACCGAGGTCAAGGCGATCCGCGCCGGCCGGGCGAACCTGAACGACGCCTTCGCCCGAA
TCCACCACGGCGAGGTGCTTTTGTACAACATGAATATCTCGCCGTTGCAGACCGCCGGTGCCTTCGCCCACGATCCGCTG
CGCACCCGCAAACTGCTGCTCAAACGCCGCGAAATCCACAAACTGACCGGCCGGGTCGAGGAAAAAGGTCTGACCCTGAT
TCCCCTCAAGCTCTATCTCGAAGGCAGTTGGGTAAAACTTGACCTCGGCCTCGCCCGGGGCAAAAAGCTCTACGACAAGC
GCGAAGACATCAAAAAACGGGAGACCAAGCGCGACATCGAGCGGGCCATGCGGCGCTGA

Upstream 100 bases:

>100_bases
CGCTGAAAGGTAATGGGTGAGGCCCTGGTGGGTCTCACCTTTCTTGTCGATTGCCCCCACGACTGGGATAGTCTGGGAGG
ATCAACCCATCCCCACGTCC

Downstream 100 bases:

>100_bases
CGGCCCCTATCTGCGGACGGTGGCCACTTGGGCTTCGGGCTTTTGCCGGTAAGATAGAATGCAGCTGATTGTGGTTTTGG
TATTGCCTGCGCAGACACCG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MAGEKTRKILVDNRKARFEYEILETYSAGLALLGTEVKAIRAGRANLNDAFARIHHGEVLLYNMNISPLQTAGAFAHDPL
RTRKLLLKRREIHKLTGRVEEKGLTLIPLKLYLEGSWVKLDLGLARGKKLYDKREDIKKRETKRDIERAMRR

Sequences:

>Translated_152_residues
MAGEKTRKILVDNRKARFEYEILETYSAGLALLGTEVKAIRAGRANLNDAFARIHHGEVLLYNMNISPLQTAGAFAHDPL
RTRKLLLKRREIHKLTGRVEEKGLTLIPLKLYLEGSWVKLDLGLARGKKLYDKREDIKKRETKRDIERAMRR
>Mature_151_residues
AGEKTRKILVDNRKARFEYEILETYSAGLALLGTEVKAIRAGRANLNDAFARIHHGEVLLYNMNISPLQTAGAFAHDPLR
TRKLLLKRREIHKLTGRVEEKGLTLIPLKLYLEGSWVKLDLGLARGKKLYDKREDIKKRETKRDIERAMRR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=140, Percent_Identity=47.8571428571429, Blast_Score=137, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_GLOVI (Q7NKI3)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924440.1
- ProteinModelPortal:   Q7NKI3
- SMR:   Q7NKI3
- GeneID:   2598672
- GenomeReviews:   BA000045_GR
- KEGG:   gvi:gll1494
- NMPDR:   fig|251221.1.peg.1494
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   GVIO251221:GLL1494-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17550; Mature: 17419

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGEKTRKILVDNRKARFEYEILETYSAGLALLGTEVKAIRAGRANLNDAFARIHHGEVL
CCCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEE
LYNMNISPLQTAGAFAHDPLRTRKLLLKRREIHKLTGRVEEKGLTLIPLKLYLEGSWVKL
EEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEECCEEEE
DLGLARGKKLYDKREDIKKRETKRDIERAMRR
EECHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGEKTRKILVDNRKARFEYEILETYSAGLALLGTEVKAIRAGRANLNDAFARIHHGEVL
CCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEE
LYNMNISPLQTAGAFAHDPLRTRKLLLKRREIHKLTGRVEEKGLTLIPLKLYLEGSWVKL
EEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEECCEEEE
DLGLARGKKLYDKREDIKKRETKRDIERAMRR
EECHHCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14621292