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The map label for this gene is ybdH [C]

Identifier: 37521025

GI number: 37521025

Start: 1561833

End: 1562909

Strand: Reverse

Name: ybdH [C]

Synonym: gll1456

Alternate gene names: 37521025

Gene position: 1562909-1561833 (Counterclockwise)

Preceding gene: 37521027

Following gene: 37521024

Centisome position: 33.55

GC content: 66.2

Gene sequence:

>1077_bases
GTGGCCCCGCAGCAAGTACGGCGCGGTCACGGCACTATCGAAATCTTGGGGGAATGGACCCGGCGGCTCGGAAGCCGACC
GCTGATCGTCGGTGGCCAAAATACCCTGGCGCGCTGGCGACCGACGCTGGAGAAGATTTTACAGGAAGCGGGGCTTGAAG
CAGTCTTTGCCGATTACGGTATCGACTGTACCGAAGCGAACTTGGCGCGACTGGTGGACAAGGCGTCCGGGCACGACGTG
GTGATCGGCGTCGGGGGCGGTAAAGCCCTCGACATGGCCAAACTGGTCGCGGCGCGCCGCGGCCTGCCGATGATCGCGCT
GCCCACCTCGGCGGCCACCTGTGCGGCTTGGGCGGCTTTGTCGAATATTTACTCCGAAGCGGGCCAGTGGCTCTACGGCG
TCGAACTCGACCACGCACCTGAAGGGCTCATCGTCGATTACGACTTGATTGCCACCGCCCCGGTGCGCACGCTGGTGAGC
GGCATGGGGGACGCCCTCGCCAAGTGGTACGAAGCGTCCATCAGCTCCGGCGACTCGGACGATGTGCTGGTGATTAGCGC
CGTGCAGCAGGCCCGGGTGCTGCGCGACTTGATTTTGCAGTTGGGAGAAGCGGCCGTGGGCGAACCCGGCGGCCGGGCCT
GGGAGCAGATGGTCGATGCAAGCATTTGCCTGGCGGGGATGGTGGGGGGCCTTGGGGGGGCGCGCTGCCGCACCGTCGCC
GCCCACGCCGTCCACAACGGCCTCACCAGCCTGGGTGCCACCCGCCGCTCGTTGCACGGCGAAAAAGTCGCCCTGGGTGT
TCTGGTTCAACTTAGGCTCGAAGAAACCGTCGGCCGCCAGCGCCTGGCAAGCATCGCCCGCGAGCAGCTCGAACAGTTCT
ACCGCCGTGTGGGTCTGCCTTTGAGCCTTGAGGATCTGCACCTCGCTGCGCTGGACGACGAGCAGTTGCTGGCGGTTGCC
CGGCTGTGCTGCCAGCCGCAATCCGACATCCATTACTTGCCTTTTGCCGTCGAACCCGAGCAGTTGGCGCGGGTGCTGCG
CGAGAGCGCCCGGCCGCGCGCCGCTCGTCTAAGCTGA

Upstream 100 bases:

>100_bases
TCCGACCCGTCTTTGCGGATGGGCATAAAAAAGTTACTAATGAGAGATGGACCTTTGAGCGAGCCGAGCGTTGAACGAAA
CTATAGCGCTGCAAACTCTG

Downstream 100 bases:

>100_bases
TGGGTGGAGCGGAGGATGGCGATGTTTGAACTGATTCTGTTGCCCCTGGACAGTTCGCCGGAAAGCGAAAGGGCGCTGCA
GGTGGCTTTGAGCCTCGCCC

Product: putative oxidoreductase

Products: glycerone; NADH; H+

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MAPQQVRRGHGTIEILGEWTRRLGSRPLIVGGQNTLARWRPTLEKILQEAGLEAVFADYGIDCTEANLARLVDKASGHDV
VIGVGGGKALDMAKLVAARRGLPMIALPTSAATCAAWAALSNIYSEAGQWLYGVELDHAPEGLIVDYDLIATAPVRTLVS
GMGDALAKWYEASISSGDSDDVLVISAVQQARVLRDLILQLGEAAVGEPGGRAWEQMVDASICLAGMVGGLGGARCRTVA
AHAVHNGLTSLGATRRSLHGEKVALGVLVQLRLEETVGRQRLASIAREQLEQFYRRVGLPLSLEDLHLAALDDEQLLAVA
RLCCQPQSDIHYLPFAVEPEQLARVLRESARPRAARLS

Sequences:

>Translated_358_residues
MAPQQVRRGHGTIEILGEWTRRLGSRPLIVGGQNTLARWRPTLEKILQEAGLEAVFADYGIDCTEANLARLVDKASGHDV
VIGVGGGKALDMAKLVAARRGLPMIALPTSAATCAAWAALSNIYSEAGQWLYGVELDHAPEGLIVDYDLIATAPVRTLVS
GMGDALAKWYEASISSGDSDDVLVISAVQQARVLRDLILQLGEAAVGEPGGRAWEQMVDASICLAGMVGGLGGARCRTVA
AHAVHNGLTSLGATRRSLHGEKVALGVLVQLRLEETVGRQRLASIAREQLEQFYRRVGLPLSLEDLHLAALDDEQLLAVA
RLCCQPQSDIHYLPFAVEPEQLARVLRESARPRAARLS
>Mature_357_residues
APQQVRRGHGTIEILGEWTRRLGSRPLIVGGQNTLARWRPTLEKILQEAGLEAVFADYGIDCTEANLARLVDKASGHDVV
IGVGGGKALDMAKLVAARRGLPMIALPTSAATCAAWAALSNIYSEAGQWLYGVELDHAPEGLIVDYDLIATAPVRTLVSG
MGDALAKWYEASISSGDSDDVLVISAVQQARVLRDLILQLGEAAVGEPGGRAWEQMVDASICLAGMVGGLGGARCRTVAA
HAVHNGLTSLGATRRSLHGEKVALGVLVQLRLEETVGRQRLASIAREQLEQFYRRVGLPLSLEDLHLAALDDEQLLAVAR
LCCQPQSDIHYLPFAVEPEQLARVLRESARPRAARLS

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=294, Percent_Identity=40.1360544217687, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI87082352, Length=359, Percent_Identity=33.1476323119777, Blast_Score=163, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.1.6

Molecular weight: Translated: 38366; Mature: 38234

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPQQVRRGHGTIEILGEWTRRLGSRPLIVGGQNTLARWRPTLEKILQEAGLEAVFADYG
CCCHHHHHCCCCEEHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEHHHCC
IDCTEANLARLVDKASGHDVVIGVGGGKALDMAKLVAARRGLPMIALPTSAATCAAWAAL
CCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
SNIYSEAGQWLYGVELDHAPEGLIVDYDLIATAPVRTLVSGMGDALAKWYEASISSGDSD
HHHHHHHCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DVLVISAVQQARVLRDLILQLGEAAVGEPGGRAWEQMVDASICLAGMVGGLGGARCRTVA
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AHAVHNGLTSLGATRRSLHGEKVALGVLVQLRLEETVGRQRLASIAREQLEQFYRRVGLP
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSLEDLHLAALDDEQLLAVARLCCQPQSDIHYLPFAVEPEQLARVLRESARPRAARLS
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCEECCCEECHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
APQQVRRGHGTIEILGEWTRRLGSRPLIVGGQNTLARWRPTLEKILQEAGLEAVFADYG
CCHHHHHCCCCEEHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEHHHCC
IDCTEANLARLVDKASGHDVVIGVGGGKALDMAKLVAARRGLPMIALPTSAATCAAWAAL
CCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
SNIYSEAGQWLYGVELDHAPEGLIVDYDLIATAPVRTLVSGMGDALAKWYEASISSGDSD
HHHHHHHCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DVLVISAVQQARVLRDLILQLGEAAVGEPGGRAWEQMVDASICLAGMVGGLGGARCRTVA
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AHAVHNGLTSLGATRRSLHGEKVALGVLVQLRLEETVGRQRLASIAREQLEQFYRRVGLP
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSLEDLHLAALDDEQLLAVARLCCQPQSDIHYLPFAVEPEQLARVLRESARPRAARLS
CCCCCCEEEECCHHHHHHHHHHHCCCCCCCEECCCEECHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: glycerol; NAD+

Specific reaction: glycerol + NAD+ = glycerone + NADH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]