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The map label for this gene is cpcS4 [H]

Identifier: 37520828

GI number: 37520828

Start: 1335121

End: 1335714

Strand: Direct

Name: cpcS4 [H]

Synonym: glr1259

Alternate gene names: 37520828

Gene position: 1335121-1335714 (Clockwise)

Preceding gene: 37520826

Following gene: 161702942

Centisome position: 28.66

GC content: 64.48

Gene sequence:

>594_bases
ATGCGATTTTCTCCACCGATGACGATGATGGATTTCTTTCGCAAAAGCGAAGGAACCTGGTTTACGCAGCGGACCGTGCA
CCACTTCGACGCCGTCGCCGACGAATCGGGCGAGTCGAATTTGATCGTGCGGGTGCTCGAAGCGGACAACCCGCTCGTTC
TGCAGGTGTGCGAAGCCCAGCGCATCGACCCGGCCCGGGCGCTTGGCGGGGCGGCCTTCACCTGGCAGGACAACCTGGAG
ACCGACGATCCCGGCCCGAACCGCGCCGCCGTCCTGGTGGATTTACCCACCGACGCAAGCCGCCGCAGCGGTCGATTGCT
GCGCAACCAGGGCTATGTCGAAAACATTCCGGTCGCGAGCCGCTACGCCTTTGCGCCCGACGGTGTGCTCACCATCGACA
CCGAGTACGTCAACAACCAGGGCCAGGAGCGCTGCTGGTTCATCAGCGATCACTTTCGGATCCGGGTGAGCACCGTGCGC
CTGATGGGCGGTGTCAACCTGATGACCTATTGTTCCGAACGCCGCTGCGTCCTGCCGGACAGCCTCGAAGCGCTGCGCAG
CCGCCACGCTGCCGGGGTGGCCGCCCCCAGATAG

Upstream 100 bases:

>100_bases
CATCGTAGCCTGGCGCCGTCGGTGGACACCCGCGGGCGGGTCCGCTACCATGGCGACCGGGCTGCCCAGGCGCCCGAGAA
CCGCTTTTTTTGCCAGTGCA

Downstream 100 bases:

>100_bases
ATTAGTATCGATTTATTTTGCATTGAGCGGGTGCTGAGCCCGGCAAATCTGCCCGATTGTATGGGCTAAGCCACCTCCGG
CGCTCCTCCGGTAGCGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MRFSPPMTMMDFFRKSEGTWFTQRTVHHFDAVADESGESNLIVRVLEADNPLVLQVCEAQRIDPARALGGAAFTWQDNLE
TDDPGPNRAAVLVDLPTDASRRSGRLLRNQGYVENIPVASRYAFAPDGVLTIDTEYVNNQGQERCWFISDHFRIRVSTVR
LMGGVNLMTYCSERRCVLPDSLEALRSRHAAGVAAPR

Sequences:

>Translated_197_residues
MRFSPPMTMMDFFRKSEGTWFTQRTVHHFDAVADESGESNLIVRVLEADNPLVLQVCEAQRIDPARALGGAAFTWQDNLE
TDDPGPNRAAVLVDLPTDASRRSGRLLRNQGYVENIPVASRYAFAPDGVLTIDTEYVNNQGQERCWFISDHFRIRVSTVR
LMGGVNLMTYCSERRCVLPDSLEALRSRHAAGVAAPR
>Mature_197_residues
MRFSPPMTMMDFFRKSEGTWFTQRTVHHFDAVADESGESNLIVRVLEADNPLVLQVCEAQRIDPARALGGAAFTWQDNLE
TDDPGPNRAAVLVDLPTDASRRSGRLLRNQGYVENIPVASRYAFAPDGVLTIDTEYVNNQGQERCWFISDHFRIRVSTVR
LMGGVNLMTYCSERRCVLPDSLEALRSRHAAGVAAPR

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR018536 [H]

Pfam domain/function: PF09367 CpeS [H]

EC number: NA

Molecular weight: Translated: 22101; Mature: 22101

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSPPMTMMDFFRKSEGTWFTQRTVHHFDAVADESGESNLIVRVLEADNPLVLQVCEAQ
CCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCC
RIDPARALGGAAFTWQDNLETDDPGPNRAAVLVDLPTDASRRSGRLLRNQGYVENIPVAS
CCCHHHHCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCC
RYAFAPDGVLTIDTEYVNNQGQERCWFISDHFRIRVSTVRLMGGVNLMTYCSERRCVLPD
EEEECCCCEEEEEHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCCEEHHCCCCCCCCH
SLEALRSRHAAGVAAPR
HHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRFSPPMTMMDFFRKSEGTWFTQRTVHHFDAVADESGESNLIVRVLEADNPLVLQVCEAQ
CCCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCC
RIDPARALGGAAFTWQDNLETDDPGPNRAAVLVDLPTDASRRSGRLLRNQGYVENIPVAS
CCCHHHHCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCC
RYAFAPDGVLTIDTEYVNNQGQERCWFISDHFRIRVSTVRLMGGVNLMTYCSERRCVLPD
EEEECCCCEEEEEHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCCEEHHCCCCCCCCH
SLEALRSRHAAGVAAPR
HHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA