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The map label for this gene is apcC [H]

Identifier: 37520817

GI number: 37520817

Start: 1327259

End: 1327468

Strand: Direct

Name: apcC [H]

Synonym: gvip174

Alternate gene names: 37520817

Gene position: 1327259-1327468 (Clockwise)

Preceding gene: 37520816

Following gene: 37520818

Centisome position: 28.49

GC content: 61.9

Gene sequence:

>210_bases
ATGAGTCGCTATTTCAAAGTGACGGCCTGCATCCCCAGCCTCAAGCGGGTGCGCACCGGCCGCGAACTGCAGAACACCTT
CTTCACCAAGTTGGTGCCCTACGAAAACTGGTTCACCGAGCAGCAGCGGATCCAGAAAGCCGGGGGCAAAGTCCTGAGCG
TCAAGCTCTTCACCGGCGTCCAGGGCGCCAACACCGGCGTCGGCGCCTGA

Upstream 100 bases:

>100_bases
TTCGACTACCTCTCCTCCGGTTTGAGCTAGGTTTACCGGCTGAAGCGGGGGGCGGCACCCGCCCCCTTCGCCCCAACCGG
TTATCTCAAGGAGAACCACC

Downstream 100 bases:

>100_bases
AGCGGCCGAACCAAACTGTTTGACACCAAAAGCTCCGGCCGCCGGGGCTTTTTTGTTGGAGCATGCCTTGACATATGCAA
TTTGTTGCATCAAACTATGG

Product: phycobilisome small core linker polypeptide

Products: NA

Alternate protein names: LC 7.8 [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSRYFKVTACIPSLKRVRTGRELQNTFFTKLVPYENWFTEQQRIQKAGGKVLSVKLFTGVQGANTGVGA

Sequences:

>Translated_69_residues
MSRYFKVTACIPSLKRVRTGRELQNTFFTKLVPYENWFTEQQRIQKAGGKVLSVKLFTGVQGANTGVGA
>Mature_68_residues
SRYFKVTACIPSLKRVRTGRELQNTFFTKLVPYENWFTEQQRIQKAGGKVLSVKLFTGVQGANTGVGA

Specific function: Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with allophycocyanin (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011134
- InterPro:   IPR011064
- InterPro:   IPR008213 [H]

Pfam domain/function: PF01383 CpcD [H]

EC number: NA

Molecular weight: Translated: 7754; Mature: 7623

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYFKVTACIPSLKRVRTGRELQNTFFTKLVPYENWFTEQQRIQKAGGKVLSVKLFTGV
CCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCC
QGANTGVGA
CCCCCCCCC
>Mature Secondary Structure 
SRYFKVTACIPSLKRVRTGRELQNTFFTKLVPYENWFTEQQRIQKAGGKVLSVKLFTGV
CCEEEHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCC
QGANTGVGA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840; 8665889 [H]