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The map label for this gene is apcD [H]

Identifier: 37520750

GI number: 37520750

Start: 1261726

End: 1262211

Strand: Direct

Name: apcD [H]

Synonym: gvip153

Alternate gene names: 37520750

Gene position: 1261726-1262211 (Clockwise)

Preceding gene: 37520749

Following gene: 37520751

Centisome position: 27.08

GC content: 61.73

Gene sequence:

>486_bases
ATGAGTGTCGTGCTCACGACGATCATGAACGCCGATCAGCAACTGCGCTACCCGAGCGTCGGCGAACTCGAACAGATCAA
AAATTTTATGGAGGACAGCGCCCTGCGCCTCAAGGTCGCCAAGACCCTGAGCGACGCGAACGACCGGGTGGTCAAGCAGG
CGTCCGCCGGGCTGTTCCAGCGCCGCCCCGATCTCAACAACCCAGGCGGCAACGCCTACGGCGAGAAGCGCCTGGGCAGC
TGCATCCGCGATCTGGGTTGGTACTACCGCCTGATCACCTACTCGATCGTGGCGGGCAACAACGAACCGGTCGAGCGCAT
CGGCCTCACGGGCATCTTCGAGATGTACCGCGTGCTGGAAGTGCCGATCCCCGCCATGATCGAATCGATGCGTCTGCTCA
AAAAAGAAGCGCTCGAACTGTTGAGCCCGGCGGAAGCGGAAATCGCCGCCCCCTACTTCGACTACGTCATCGGCGCGATG
CAGTAG

Upstream 100 bases:

>100_bases
TGCTCTCAAGTAAAATGCGTGTCTAGGTCCGCTGAGCGAGGGCACCCCGCCTGTGCGAAGCATCGAGTGACAGAACACCT
GACAATCGAAGGAGAACACC

Downstream 100 bases:

>100_bases
CCGCCATGAGCAGCCACAACCTCGTCACACTCGTCAGCTGGCTGGCGGGCGATTTCAGCAATCGGGAGCAAGCCTGGGAC
GCGCCCGCCTTTTTCTCCCA

Product: allophycocyanin-B

Products: NA

Alternate protein names: Allophycocyanin gamma chain [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MSVVLTTIMNADQQLRYPSVGELEQIKNFMEDSALRLKVAKTLSDANDRVVKQASAGLFQRRPDLNNPGGNAYGEKRLGS
CIRDLGWYYRLITYSIVAGNNEPVERIGLTGIFEMYRVLEVPIPAMIESMRLLKKEALELLSPAEAEIAAPYFDYVIGAM
Q

Sequences:

>Translated_161_residues
MSVVLTTIMNADQQLRYPSVGELEQIKNFMEDSALRLKVAKTLSDANDRVVKQASAGLFQRRPDLNNPGGNAYGEKRLGS
CIRDLGWYYRLITYSIVAGNNEPVERIGLTGIFEMYRVLEVPIPAMIESMRLLKKEALELLSPAEAEIAAPYFDYVIGAM
Q
>Mature_160_residues
SVVLTTIMNADQQLRYPSVGELEQIKNFMEDSALRLKVAKTLSDANDRVVKQASAGLFQRRPDLNNPGGNAYGEKRLGSC
IRDLGWYYRLITYSIVAGNNEPVERIGLTGIFEMYRVLEVPIPAMIESMRLLKKEALELLSPAEAEIAAPYFDYVIGAMQ

Specific function: Allophycocyanin is a photosynthetic bile pigment-protein complex with maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18033; Mature: 17902

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVLTTIMNADQQLRYPSVGELEQIKNFMEDSALRLKVAKTLSDANDRVVKQASAGLFQ
CHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
RRPDLNNPGGNAYGEKRLGSCIRDLGWYYRLITYSIVAGNNEPVERIGLTGIFEMYRVLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VPIPAMIESMRLLKKEALELLSPAEAEIAAPYFDYVIGAMQ
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVVLTTIMNADQQLRYPSVGELEQIKNFMEDSALRLKVAKTLSDANDRVVKQASAGLFQ
HHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
RRPDLNNPGGNAYGEKRLGSCIRDLGWYYRLITYSIVAGNNEPVERIGLTGIFEMYRVLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VPIPAMIESMRLLKKEALELLSPAEAEIAAPYFDYVIGAMQ
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3130540 [H]