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The map label for this gene is lpsD [H]

Identifier: 37520634

GI number: 37520634

Start: 1141298

End: 1142545

Strand: Direct

Name: lpsD [H]

Synonym: glr1065

Alternate gene names: 37520634

Gene position: 1141298-1142545 (Clockwise)

Preceding gene: 37520633

Following gene: 37520635

Centisome position: 24.5

GC content: 64.66

Gene sequence:

>1248_bases
GTGAGAGCCGCCATGAGCCTGAAAGTCTGCATCGCAACCCTTGAATTTCCCCCCGATGTCGGGGGGGTCGGCGAATCGGT
CCACCGCATCGCCCACTTCCTGCGGGATCTGGGCTACGAAGTGCACATCGCCGTCTTTCGCTCGGAACCTAAGGCTGTGC
TAAGCCAGGGTCCGCGCCGCGCCCAGTGCCTCACCACCGAGCAGGACGGCCTGAGCGTCCACCGCCTCAAACCGCCCATC
CGCTCCGCCGATGCCTCCAAACAGGAGATGCTGAGCGATCTGTACTTTCAGCTGTGCGCCCTGCACCGGCGCTACAGCTT
CGATGTGCTGCACGCCTTTTTCTTGAGCGAGACAGGCTATCTGTTCACCCTGCTCGGCCGCGAATACGGCGTGCCGGTGA
TCAACAGCATCCGCGGCTCGGACATCCACAAGCACATGTTCAGCCCGCTACTGCACGCCCAGATGGTCTGGACCCTCGAA
AATTCCGCCTGGGTGACCTTTGTCAGCCGCGACCTGCAAAGCCGGGCAGCGCTCTTTGCCCCGGCCATCCGCGACAAATC
GTCGGCTTTCTGGAATTCGATCGACCCGGTGCGCTTTGAGCATGTCGGGGATCCCCCCGTCCCTCCCCTGAGCGGCACCG
TCATTGGCTCGGTCGGCCGCTTCCGCGACAAAAAAGGGATCGAATTTCTGCTGGATGCCTGCGGCCGCCTGCTGGCCGAA
TCGCTCGACGTTACCCTGCTGCTGGTGGGAGACTTCGTGCCCAAAGAAGCCGCCTACTGGCAATTGGAAGTCGAAAATGC
CGGCCTGGGCGACCGGCTGGTGGTAACGGGACTATTGCCCCGCGAGCAGGCGCTCGCCTGCTACGCCCTCCTCGATATCT
TCGTCATCCCTTCGCTGCACGACGGCTGCCCGAACGCCCTACTGGAGGCGATGACGGCGGGCCGGGCGATCGTGGGCACC
CGCGCGGACGCCATCGGCGAAATTCTGGATCACGAGCGCGACGCGCTTTTGGTTCCCCCCTGCGACAGCGAAGCCCTCGC
AGCCGCCCTGGGCCGCCTCGTCGCTTCGCCGGATCTGCGCCGCCAACTGGGAGAAGCCGCCCGCTACAAAGTCAGCGAAT
GGCTCGCCCCCTGGATCGAACAGCAGCACTGGAGCGAAATCTACCGGCACGTCCTCCAGCAGACCGATGCCGCCGCCCAT
AGCCTGCCTGCCACCGCCGTCGAACTGCCCCTGGCGGCTGACCACTAG

Upstream 100 bases:

>100_bases
GCTTGCCCCCGCCCTGCCCACCGCCGCCGTCGGCCATTGCCGTTGATCCCGGGGCAGGGTTGCACCGCACCCCACTACCA
TCACCAACCGCTACCGAGGT

Downstream 100 bases:

>100_bases
CAATGCACTTTGGGATATTTACCATGCGCAAGCCAACTGTCTGTCTTATCGTCTCGCCGCGCGAGCGCTTCAGCTACACG
CGCGAGTCGCTCGAAAGCCT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MRAAMSLKVCIATLEFPPDVGGVGESVHRIAHFLRDLGYEVHIAVFRSEPKAVLSQGPRRAQCLTTEQDGLSVHRLKPPI
RSADASKQEMLSDLYFQLCALHRRYSFDVLHAFFLSETGYLFTLLGREYGVPVINSIRGSDIHKHMFSPLLHAQMVWTLE
NSAWVTFVSRDLQSRAALFAPAIRDKSSAFWNSIDPVRFEHVGDPPVPPLSGTVIGSVGRFRDKKGIEFLLDACGRLLAE
SLDVTLLLVGDFVPKEAAYWQLEVENAGLGDRLVVTGLLPREQALACYALLDIFVIPSLHDGCPNALLEAMTAGRAIVGT
RADAIGEILDHERDALLVPPCDSEALAAALGRLVASPDLRRQLGEAARYKVSEWLAPWIEQQHWSEIYRHVLQQTDAAAH
SLPATAVELPLAADH

Sequences:

>Translated_415_residues
MRAAMSLKVCIATLEFPPDVGGVGESVHRIAHFLRDLGYEVHIAVFRSEPKAVLSQGPRRAQCLTTEQDGLSVHRLKPPI
RSADASKQEMLSDLYFQLCALHRRYSFDVLHAFFLSETGYLFTLLGREYGVPVINSIRGSDIHKHMFSPLLHAQMVWTLE
NSAWVTFVSRDLQSRAALFAPAIRDKSSAFWNSIDPVRFEHVGDPPVPPLSGTVIGSVGRFRDKKGIEFLLDACGRLLAE
SLDVTLLLVGDFVPKEAAYWQLEVENAGLGDRLVVTGLLPREQALACYALLDIFVIPSLHDGCPNALLEAMTAGRAIVGT
RADAIGEILDHERDALLVPPCDSEALAAALGRLVASPDLRRQLGEAARYKVSEWLAPWIEQQHWSEIYRHVLQQTDAAAH
SLPATAVELPLAADH
>Mature_415_residues
MRAAMSLKVCIATLEFPPDVGGVGESVHRIAHFLRDLGYEVHIAVFRSEPKAVLSQGPRRAQCLTTEQDGLSVHRLKPPI
RSADASKQEMLSDLYFQLCALHRRYSFDVLHAFFLSETGYLFTLLGREYGVPVINSIRGSDIHKHMFSPLLHAQMVWTLE
NSAWVTFVSRDLQSRAALFAPAIRDKSSAFWNSIDPVRFEHVGDPPVPPLSGTVIGSVGRFRDKKGIEFLLDACGRLLAE
SLDVTLLLVGDFVPKEAAYWQLEVENAGLGDRLVVTGLLPREQALACYALLDIFVIPSLHDGCPNALLEAMTAGRAIVGT
RADAIGEILDHERDALLVPPCDSEALAAALGRLVASPDLRRQLGEAARYKVSEWLAPWIEQQHWSEIYRHVLQQTDAAAH
SLPATAVELPLAADH

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 45789; Mature: 45789

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAMSLKVCIATLEFPPDVGGVGESVHRIAHFLRDLGYEVHIAVFRSEPKAVLSQGPRR
CCCHHEEHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHCCCCC
AQCLTTEQDGLSVHRLKPPIRSADASKQEMLSDLYFQLCALHRRYSFDVLHAFFLSETGY
CEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
LFTLLGREYGVPVINSIRGSDIHKHMFSPLLHAQMVWTLENSAWVTFVSRDLQSRAALFA
EEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHEEEEECCCEEEEHHHHHHHHHHHHHH
PAIRDKSSAFWNSIDPVRFEHVGDPPVPPLSGTVIGSVGRFRDKKGIEFLLDACGRLLAE
HHHHCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHCHHHHCCCCHHHHHHHHHHHHHHH
SLDVTLLLVGDFVPKEAAYWQLEVENAGLGDRLVVTGLLPREQALACYALLDIFVIPSLH
HCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
DGCPNALLEAMTAGRAIVGTRADAIGEILDHERDALLVPPCDSEALAAALGRLVASPDLR
CCCHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHHH
RQLGEAARYKVSEWLAPWIEQQHWSEIYRHVLQQTDAAAHSLPATAVELPLAADH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCC
>Mature Secondary Structure
MRAAMSLKVCIATLEFPPDVGGVGESVHRIAHFLRDLGYEVHIAVFRSEPKAVLSQGPRR
CCCHHEEHHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHCCCCC
AQCLTTEQDGLSVHRLKPPIRSADASKQEMLSDLYFQLCALHRRYSFDVLHAFFLSETGY
CEEEECCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
LFTLLGREYGVPVINSIRGSDIHKHMFSPLLHAQMVWTLENSAWVTFVSRDLQSRAALFA
EEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHEEEEECCCEEEEHHHHHHHHHHHHHH
PAIRDKSSAFWNSIDPVRFEHVGDPPVPPLSGTVIGSVGRFRDKKGIEFLLDACGRLLAE
HHHHCCCHHHHCCCCCEEEECCCCCCCCCCCCCHHHCHHHHCCCCHHHHHHHHHHHHHHH
SLDVTLLLVGDFVPKEAAYWQLEVENAGLGDRLVVTGLLPREQALACYALLDIFVIPSLH
HCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCC
DGCPNALLEAMTAGRAIVGTRADAIGEILDHERDALLVPPCDSEALAAALGRLVASPDLR
CCCHHHHHHHHHCCCEEECCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHHH
RQLGEAARYKVSEWLAPWIEQQHWSEIYRHVLQQTDAAAHSLPATAVELPLAADH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]