Click here to switch to the map view.

The map label for this gene is xer

Identifier: 37520562

GI number: 37520562

Start: 1058173

End: 1058748

Strand: Reverse

Name: xer

Synonym: gvip131

Alternate gene names: NA

Gene position: 1058748-1058173 (Counterclockwise)

Preceding gene: 37520563

Following gene: 37520561

Centisome position: 22.72

GC content: 62.15

Gene sequence:

>576_bases
GTGCTCTCCGAAAAGGAAGTGCAGGCCGTCCTCAAAAAAGGTTTCATCGACGCCAAATACCAAGCCCTTTTTCAGGCGAT
GCTCTATACCGGCTGCCGGGTCAGTGAAGCCTGTTCGCTGCGCACCGCCGATGTCTACGAACTCGATGAAACCGGGTCGG
TGCGCACCGTCGGCAAAAAAAGCCGCCCGCGCTACGTCGTGCAGGAGGTGATTACCTTTCGCCGCGCGAGCACCAAAGGC
GGCATCTCGACGCGCTCGATTCCGGTGCATCCCGCTCTGCGCGCCTGTTTGGAGAGTTTTGCCCCCGGGGGGGTCTACGT
TTTTGAGAGCACCTCCCCGGGTACTGCGATGCTGCGCCGCACGGTCGATTATGCCTTTCGCGCCGCCTTCAAGGCTTGCC
GCATCCAGGGAGCGAGCACCCACAGCCTCAGGCGCACCGCCATCACCCGCCTGCACACGAGCGGCGTGGGCCTACGCACA
ATCCAACGCATTTCAGGCCACCGCTCCCTCGCCGCCCTGCAGCGCTATATCGAAGTAAGCGACGAGCAGGTCTCGGCGGC
CATTCAGCTATTGTAG

Upstream 100 bases:

>100_bases
GCAAGGGTTTTACGAAGCGGCGCCAGATCTGATATCCTGAAATCGTCGATTTTGATAAAAAGAGGAAAGCTTGAAAATTA
ACCGCCACGGCCAAGCCCGG

Downstream 100 bases:

>100_bases
ACGCGGTTTTCACATAATGTTTATACTGCTGCACTGCAGCCTCCCAGGTTTTTGAGGCCGAGGGCGGGTACCTGTTTCAG
GTCGCCAGGGCAAATGGATA

Product: integrase/recombinase

Products: NA

Alternate protein names: Integrase Family Protein; Integrase/Recombinase

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MLSEKEVQAVLKKGFIDAKYQALFQAMLYTGCRVSEACSLRTADVYELDETGSVRTVGKKSRPRYVVQEVITFRRASTKG
GISTRSIPVHPALRACLESFAPGGVYVFESTSPGTAMLRRTVDYAFRAAFKACRIQGASTHSLRRTAITRLHTSGVGLRT
IQRISGHRSLAALQRYIEVSDEQVSAAIQLL

Sequences:

>Translated_191_residues
MLSEKEVQAVLKKGFIDAKYQALFQAMLYTGCRVSEACSLRTADVYELDETGSVRTVGKKSRPRYVVQEVITFRRASTKG
GISTRSIPVHPALRACLESFAPGGVYVFESTSPGTAMLRRTVDYAFRAAFKACRIQGASTHSLRRTAITRLHTSGVGLRT
IQRISGHRSLAALQRYIEVSDEQVSAAIQLL
>Mature_191_residues
MLSEKEVQAVLKKGFIDAKYQALFQAMLYTGCRVSEACSLRTADVYELDETGSVRTVGKKSRPRYVVQEVITFRRASTKG
GISTRSIPVHPALRACLESFAPGGVYVFESTSPGTAMLRRTVDYAFRAAFKACRIQGASTHSLRRTAITRLHTSGVGLRT
IQRISGHRSLAALQRYIEVSDEQVSAAIQLL

Specific function: Unknown

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21047; Mature: 21047

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSEKEVQAVLKKGFIDAKYQALFQAMLYTGCRVSEACSLRTADVYELDETGSVRTVGKK
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCEEECCCC
SRPRYVVQEVITFRRASTKGGISTRSIPVHPALRACLESFAPGGVYVFESTSPGTAMLRR
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
TVDYAFRAAFKACRIQGASTHSLRRTAITRLHTSGVGLRTIQRISGHRSLAALQRYIEVS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHCC
DEQVSAAIQLL
HHHHHHHHHCC
>Mature Secondary Structure
MLSEKEVQAVLKKGFIDAKYQALFQAMLYTGCRVSEACSLRTADVYELDETGSVRTVGKK
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCEECCCCCCEEECCCC
SRPRYVVQEVITFRRASTKGGISTRSIPVHPALRACLESFAPGGVYVFESTSPGTAMLRR
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
TVDYAFRAAFKACRIQGASTHSLRRTAITRLHTSGVGLRTIQRISGHRSLAALQRYIEVS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHCC
DEQVSAAIQLL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA