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The map label for this gene is oppA [H]

Identifier: 37520517

GI number: 37520517

Start: 1005232

End: 1006890

Strand: Reverse

Name: oppA [H]

Synonym: gll0948

Alternate gene names: 37520517

Gene position: 1006890-1005232 (Counterclockwise)

Preceding gene: 37520518

Following gene: 37520516

Centisome position: 21.61

GC content: 65.58

Gene sequence:

>1659_bases
ATGGTGCCGCTGCCCCGGGCCCTCGCGCGATCGTGGCCGGCGTTGCTGGCGGGCCTGGCTGTGGCCGGTTGCAGCAGCCA
GGCCGAGGAGATCTACTTTGGTCGCCTGGACCCGCCGCCCGAGAACATCCTGCGGGTGGGTAACGGCCACGAACCGCGTT
CGTTCGACCCCCACAAGTCGATCGCCTACCCGGAAGGCCACGTCTATCTGAACATTTACGAAGGACTGGCCAGCCGCGAC
GGCAAGACCCTCGAACCCCGTCCGGCCATCGCCACCGGTTGGCGGACCACCGCCGACCGTCGCCGCTGGATTTTTGCACT
GCGCCGGGGAGCGCGCTTCAGCGACGGTGTACCGATCACCGCCCACGACTTTGTATTTAGCTGGCGGCGGCTGGTGGAGC
CGGAGCGCGCCTCGCCCTACATCTTTGCCGCCTACGGCATCAAGAACGCCCGCGCCATCTGCGAGGGCAAACTCCCGATC
GATGCGCTCGGTGTGCAGGCCCTGGACGATTTCACCCTGGCAGTCGACCTGGAGCAGCCGACGCCCTACTTTGACAAACT
GGTCACCGCCTGGGCCTTCGTCGCCCTGCCGCGCCACGTCATCGAGCGCCGGGGAGACCGCTGGACGCAGCCTGAGCATC
TGGTGGCAAGCGGCCCGTTTCGTCTGGCTGAACATGTCCCTTACCACCAGATTGTGCTGGAGAAAAATCCGTTCTACTGG
GACCGGCGCAACGTGCAGCTGGAGAGGGTCTACCTCTATCCGGTGGCTGACGGAGCCCAGAATGTCAATCTCTACCGAGC
CGGGGAAATCGACGTGATGCGCGGCGGCTACCTGCCCCTGCCGATGATCCCGCGCCTCAGCCGGAAGCGCGATTTCCAGC
GCGGCCCCTATTTTGCCTCGCGCTACTACAGCTACAACCTGGCCCGCAAACCCTTCGACGACGTGCGGGTGCGCCGGGCT
TTGAGTCTCGCTGTCGATCGCGCCGTCCTCGCAGCCAAATTCATCGGCAATGGTGAGGTGCCCGCCGGTGGCGTCGTGCC
GCCCATCGTTCCGGGTTACCGGGCGCCTGAGGCCGTGGGTTTCGACCCCGAGCGCGCCCGCCGGTTGCTTGCCGAGGCAG
GCTATCCGGGCGGCCGGGGTTTTCCGGCCTTCAGCCTCACTTTGTTTACCCGCGACGACGTGCGCAAAGTGGGCGAGGCG
ATCCAGAGCATGTGGAAGCACACCCTGGGTATCGACGTGCGGCTGGAGAGCGAGGAAGGCCAGACCTACACCGCCCGCCT
GGAGCGGCGCGATTTTGCGGTGACCACCGACGGTTGGGTGGGCGATTACATCGATCCGACCGCCTTTTTGGACATCTTTG
CGGAGGCGAACGCCAACAACCACTCGGGCTGGACCGATCCGCGCTACGGCGCACTGCTCAGACAGGCGAGCGTCGAACCT
GACGCGCGTCGCCGCTTGGCGCTTCTGGCTGCAGCCGAGGCGCGGCTGGTCGAAGAGTCGCCGATCATCCCCCTCACCTA
TATGGCGCTCAATTACCTCAAAAAACCCTGGGTGCAGGGTTGGTACGTCGATCCGCTCGAACAGCACCAGTTCAAGTACG
TGCGCATCGAGCGCGGGTGGCAGGCGGCAACCAGCGGCACCCCCGCCCATGGGCTTTAA

Upstream 100 bases:

>100_bases
GCGCTTGCCCGCCGCGCTCTCGCATGGGTGTGTCAAGTCATACAGAGCGGCCGCCCGAATTGTCCTAACCTGGCTGCCAA
CGTTGCAAGGTCTTACGAAG

Downstream 100 bases:

>100_bases
ACCGACGCCGGGCGGCCCGCGATGCTGCTTGCCTGGAACCATGCCCGGATCCGGCGGCCCGCTGGGGGGTGACGGCTCCC
TGGCCCGACGTGGTACATTG

Product: ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MVPLPRALARSWPALLAGLAVAGCSSQAEEIYFGRLDPPPENILRVGNGHEPRSFDPHKSIAYPEGHVYLNIYEGLASRD
GKTLEPRPAIATGWRTTADRRRWIFALRRGARFSDGVPITAHDFVFSWRRLVEPERASPYIFAAYGIKNARAICEGKLPI
DALGVQALDDFTLAVDLEQPTPYFDKLVTAWAFVALPRHVIERRGDRWTQPEHLVASGPFRLAEHVPYHQIVLEKNPFYW
DRRNVQLERVYLYPVADGAQNVNLYRAGEIDVMRGGYLPLPMIPRLSRKRDFQRGPYFASRYYSYNLARKPFDDVRVRRA
LSLAVDRAVLAAKFIGNGEVPAGGVVPPIVPGYRAPEAVGFDPERARRLLAEAGYPGGRGFPAFSLTLFTRDDVRKVGEA
IQSMWKHTLGIDVRLESEEGQTYTARLERRDFAVTTDGWVGDYIDPTAFLDIFAEANANNHSGWTDPRYGALLRQASVEP
DARRRLALLAAAEARLVEESPIIPLTYMALNYLKKPWVQGWYVDPLEQHQFKYVRIERGWQAATSGTPAHGL

Sequences:

>Translated_552_residues
MVPLPRALARSWPALLAGLAVAGCSSQAEEIYFGRLDPPPENILRVGNGHEPRSFDPHKSIAYPEGHVYLNIYEGLASRD
GKTLEPRPAIATGWRTTADRRRWIFALRRGARFSDGVPITAHDFVFSWRRLVEPERASPYIFAAYGIKNARAICEGKLPI
DALGVQALDDFTLAVDLEQPTPYFDKLVTAWAFVALPRHVIERRGDRWTQPEHLVASGPFRLAEHVPYHQIVLEKNPFYW
DRRNVQLERVYLYPVADGAQNVNLYRAGEIDVMRGGYLPLPMIPRLSRKRDFQRGPYFASRYYSYNLARKPFDDVRVRRA
LSLAVDRAVLAAKFIGNGEVPAGGVVPPIVPGYRAPEAVGFDPERARRLLAEAGYPGGRGFPAFSLTLFTRDDVRKVGEA
IQSMWKHTLGIDVRLESEEGQTYTARLERRDFAVTTDGWVGDYIDPTAFLDIFAEANANNHSGWTDPRYGALLRQASVEP
DARRRLALLAAAEARLVEESPIIPLTYMALNYLKKPWVQGWYVDPLEQHQFKYVRIERGWQAATSGTPAHGL
>Mature_552_residues
MVPLPRALARSWPALLAGLAVAGCSSQAEEIYFGRLDPPPENILRVGNGHEPRSFDPHKSIAYPEGHVYLNIYEGLASRD
GKTLEPRPAIATGWRTTADRRRWIFALRRGARFSDGVPITAHDFVFSWRRLVEPERASPYIFAAYGIKNARAICEGKLPI
DALGVQALDDFTLAVDLEQPTPYFDKLVTAWAFVALPRHVIERRGDRWTQPEHLVASGPFRLAEHVPYHQIVLEKNPFYW
DRRNVQLERVYLYPVADGAQNVNLYRAGEIDVMRGGYLPLPMIPRLSRKRDFQRGPYFASRYYSYNLARKPFDDVRVRRA
LSLAVDRAVLAAKFIGNGEVPAGGVVPPIVPGYRAPEAVGFDPERARRLLAEAGYPGGRGFPAFSLTLFTRDDVRKVGEA
IQSMWKHTLGIDVRLESEEGQTYTARLERRDFAVTTDGWVGDYIDPTAFLDIFAEANANNHSGWTDPRYGALLRQASVEP
DARRRLALLAAAEARLVEESPIIPLTYMALNYLKKPWVQGWYVDPLEQHQFKYVRIERGWQAATSGTPAHGL

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=527, Percent_Identity=36.2428842504744, Blast_Score=327, Evalue=8e-91,
Organism=Escherichia coli, GI87081878, Length=529, Percent_Identity=34.9716446124764, Blast_Score=306, Evalue=3e-84,
Organism=Escherichia coli, GI1789397, Length=495, Percent_Identity=36.5656565656566, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI1789966, Length=520, Percent_Identity=26.5384615384615, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1787762, Length=515, Percent_Identity=23.3009708737864, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI1787052, Length=540, Percent_Identity=23.3333333333333, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI1789887, Length=466, Percent_Identity=23.8197424892704, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787551, Length=482, Percent_Identity=24.6887966804979, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62291; Mature: 62291

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPLPRALARSWPALLAGLAVAGCSSQAEEIYFGRLDPPPENILRVGNGHEPRSFDPHKS
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCC
IAYPEGHVYLNIYEGLASRDGKTLEPRPAIATGWRTTADRRRWIFALRRGARFSDGVPIT
CCCCCCCEEEEEEHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
AHDFVFSWRRLVEPERASPYIFAAYGIKNARAICEGKLPIDALGVQALDDFTLAVDLEQP
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHEECCCCCHHHHCHHHHCCEEEEEECCCC
TPYFDKLVTAWAFVALPRHVIERRGDRWTQPEHLVASGPFRLAEHVPYHQIVLEKNPFYW
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHCCCCEEEEEECCCCEE
DRRNVQLERVYLYPVADGAQNVNLYRAGEIDVMRGGYLPLPMIPRLSRKRDFQRGPYFAS
CCCCEEEEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCHHHHCCCCCCCCHHH
RYYSYNLARKPFDDVRVRRALSLAVDRAVLAAKFIGNGEVPAGGVVPPIVPGYRAPEAVG
HHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
FDPERARRLLAEAGYPGGRGFPAFSLTLFTRDDVRKVGEAIQSMWKHTLGIDVRLESEEG
CCHHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
QTYTARLERRDFAVTTDGWVGDYIDPTAFLDIFAEANANNHSGWTDPRYGALLRQASVEP
CEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCH
DARRRLALLAAAEARLVEESPIIPLTYMALNYLKKPWVQGWYVDPLEQHQFKYVRIERGW
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEEEECCC
QAATSGTPAHGL
CCCCCCCCCCCC
>Mature Secondary Structure
MVPLPRALARSWPALLAGLAVAGCSSQAEEIYFGRLDPPPENILRVGNGHEPRSFDPHKS
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCCCCCCC
IAYPEGHVYLNIYEGLASRDGKTLEPRPAIATGWRTTADRRRWIFALRRGARFSDGVPIT
CCCCCCCEEEEEEHHHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
AHDFVFSWRRLVEPERASPYIFAAYGIKNARAICEGKLPIDALGVQALDDFTLAVDLEQP
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHEECCCCCHHHHCHHHHCCEEEEEECCCC
TPYFDKLVTAWAFVALPRHVIERRGDRWTQPEHLVASGPFRLAEHVPYHQIVLEKNPFYW
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHCCCCEEEEEECCCCEE
DRRNVQLERVYLYPVADGAQNVNLYRAGEIDVMRGGYLPLPMIPRLSRKRDFQRGPYFAS
CCCCEEEEEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCHHHHCCCCCCCCHHH
RYYSYNLARKPFDDVRVRRALSLAVDRAVLAAKFIGNGEVPAGGVVPPIVPGYRAPEAVG
HHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
FDPERARRLLAEAGYPGGRGFPAFSLTLFTRDDVRKVGEAIQSMWKHTLGIDVRLESEEG
CCHHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEECCCC
QTYTARLERRDFAVTTDGWVGDYIDPTAFLDIFAEANANNHSGWTDPRYGALLRQASVEP
CEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCH
DARRRLALLAAAEARLVEESPIIPLTYMALNYLKKPWVQGWYVDPLEQHQFKYVRIERGW
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEEEECCC
QAATSGTPAHGL
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]