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The map label for this gene is psbA [H]

Identifier: 37520348

GI number: 37520348

Start: 832184

End: 833266

Strand: Direct

Name: psbA [H]

Synonym: gvip089

Alternate gene names: 37520348

Gene position: 832184-833266 (Clockwise)

Preceding gene: 161702943

Following gene: 37520349

Centisome position: 17.86

GC content: 56.97

Gene sequence:

>1083_bases
ATGACTGCAACTCTTGAACGTCGTTCTTCACAAGGGCTGTGGGACCGCTTCGCCGATTGGGTGACCTCCACCAACAACCG
CTTCTACGTTGGTTGGTTCGGCGTCCTGATGATCCCCACCCTGCTTTCTGCGACGATTTGCTTCGTCGTCGCTTTTGTCG
CCGCCCCGCCGGTGGACATGGACGGCATCCGCGAACCGATTTCCGGTTCGCTGCTGTACGGCAACAACATCATCACCGGG
GCGGTGATCCCGTCTTCCAACGCCATCGGCCTGCACTTCTACCCAATTTGGGAAGCGGCTTCGATGGACGAGTGGCTCTA
CAACGGCGGCCCCTACCAGCTGGTGGTCTTCCATTTTCTCATTGGGGTGTTTTGCTACCTGGGCCGCGAGTGGGAGCTCA
GCTACCGTTTGGGCCTGCGTCCGTGGATCTGCATCGCCTACAGTGCTCCTGTGGCGGCGGCGGCGGCGGTCTTCTTGATT
TACCCGATTGGCCAGGGCAGCTTCAGTGACGGTATGCCGTTGGGTATTTCGGGCACGTTCAACTTCATGTTTGTTTTTCA
GGCGGAGCACAACATTCTGAACCATCCTTTCCACATGCTGGGGGTGGCGGGTGTGTTCGGCGGTTCGCTGTTCAGTGCGA
TGCACGGTTCGCTGGTGACTTCTTCATTGATTCGTGAGACGTCGATGGAAGAGTCCCAGAACTACGGATACAAGTTTGGC
CAGGAAGAGGAGACGTACAACATCATTGCGGCGCATGGTTACTTTGGCCGTTTGATTTTCCAGTACGCCAGCTTCAACAA
CAGCCGCAGTTTGCACTTTTTCTTGGCGGCGTGGCCGGTGATTGGGATTTGGTTCACGGCGCTGGGCATCAGTGTGATGG
CGTTCAACCTGAACGGCTTCAACTTCAACAGCAGCATCGTGGATTCTCAGGGTCGTGCGATATACACGTGGGCGGACATC
GTCAACCGAGCGAATTTGGGAATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCCTTGGATTTGGCTGGAACGGA
GTCGGCTCCGGTGGCGGTGGGCAACGCCGACCTCAACGGCTAA

Upstream 100 bases:

>100_bases
AGATATAAGCAAAAGCAAATCCGAGTGAACAATTAGAGCCTCATGAACTAATATATCGTTGTAAGGTAATAAGCCTTTGC
ATTATGGATTTGTCAGAACA

Downstream 100 bases:

>100_bases
TTGCTGAGCCAATTCGGACATGAAAGGGGCCCCTTCGGGGGCCTCTTTTTCGTGCCAGAATCGACCAGGACGCAGTGGAA
TGGTACGGATGATGCGAATT

Product: photosystem II protein D1

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein 3; Photosystem II protein D1 3 [H]

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTATLERRSSQGLWDRFADWVTSTNNRFYVGWFGVLMIPTLLSATICFVVAFVAAPPVDMDGIREPISGSLLYGNNIITG
AVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAAAAVFLI
YPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILNHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETSMEESQNYGYKFG
QEEETYNIIAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISVMAFNLNGFNFNSSIVDSQGRAIYTWADI
VNRANLGMEVMHERNAHNFPLDLAGTESAPVAVGNADLNG

Sequences:

>Translated_360_residues
MTATLERRSSQGLWDRFADWVTSTNNRFYVGWFGVLMIPTLLSATICFVVAFVAAPPVDMDGIREPISGSLLYGNNIITG
AVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAAAAVFLI
YPIGQGSFSDGMPLGISGTFNFMFVFQAEHNILNHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETSMEESQNYGYKFG
QEEETYNIIAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISVMAFNLNGFNFNSSIVDSQGRAIYTWADI
VNRANLGMEVMHERNAHNFPLDLAGTESAPVAVGNADLNG
>Mature_359_residues
TATLERRSSQGLWDRFADWVTSTNNRFYVGWFGVLMIPTLLSATICFVVAFVAAPPVDMDGIREPISGSLLYGNNIITGA
VIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFLIGVFCYLGREWELSYRLGLRPWICIAYSAPVAAAAAVFLIY
PIGQGSFSDGMPLGISGTFNFMFVFQAEHNILNHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETSMEESQNYGYKFGQ
EEETYNIIAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISVMAFNLNGFNFNSSIVDSQGRAIYTWADIV
NRANLGMEVMHERNAHNFPLDLAGTESAPVAVGNADLNG

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39744; Mature: 39613

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATLERRSSQGLWDRFADWVTSTNNRFYVGWFGVLMIPTLLSATICFVVAFVAAPPVDM
CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DGIREPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFL
HHCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHH
IGVFCYLGREWELSYRLGLRPWICIAYSAPVAAAAAVFLIYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMFVFQAEHNILNHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETSMEESQNYGYKFG
EEEEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QEEETYNIIAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISVMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHEEEEEECCCC
NFNSSIVDSQGRAIYTWADIVNRANLGMEVMHERNAHNFPLDLAGTESAPVAVGNADLNG
CCCCCEECCCCCEEEEHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TATLERRSSQGLWDRFADWVTSTNNRFYVGWFGVLMIPTLLSATICFVVAFVAAPPVDM
CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DGIREPISGSLLYGNNIITGAVIPSSNAIGLHFYPIWEAASMDEWLYNGGPYQLVVFHFL
HHCCCCCCCCEEECCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHH
IGVFCYLGREWELSYRLGLRPWICIAYSAPVAAAAAVFLIYPIGQGSFSDGMPLGISGTF
HHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCE
NFMFVFQAEHNILNHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETSMEESQNYGYKFG
EEEEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QEEETYNIIAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISVMAFNLNGF
CCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHEEEEEECCCC
NFNSSIVDSQGRAIYTWADIVNRANLGMEVMHERNAHNFPLDLAGTESAPVAVGNADLNG
CCCCCEECCCCCEEEEHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292 [H]