Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 37520025

GI number: 37520025

Start: 485339

End: 486412

Strand: Direct

Name: yibD [C]

Synonym: glr0456

Alternate gene names: 37520025

Gene position: 485339-486412 (Clockwise)

Preceding gene: 37520024

Following gene: 37520026

Centisome position: 10.42

GC content: 54.19

Gene sequence:

>1074_bases
ATGAGCACTCAAAGTCCTTCCTCCCACTCGCCAATATCGAGCCAACCGCTAGTCAGCATCATCATCTGTAACTACAATTT
TGGCCATCTGATTGGCCAGGCTATTGACAGTGCCCTGAAGCAAACCTATCGTAACTGCGAAATTGTGGTGGTGGACGACG
CTTCGACCGATCACTCGGTTGAAGTCATTCGCTCCTATGGCGATCAAGTTCGTCCCATCTTTCTTGAGAAAAACAGCGGG
CAGGCCGAAGCTTTCAATACTGGTCTGCGCAATAGCCGCGGAGAGATCGTTTGTTTTCTCGATTCAGACGATCGCTACTA
CGAAAACAAGGTTGAGCGTGTAGTCGAAGCCTTCGGTGAGCATCCAGAGTGGGTGCAAGTGTCCCACTCATGGGTGACTG
TCGATGCCGAAGATACCAAGATAGGCTACGGTGCCAAAAGTCTGGTGCAAGGAGATGTGCGTCGTATGCTGCTTACCTGG
GGCCGCTATCCGTGCGCCATCACATCTGCCCTGTCCTATCGCCGTAGTGTGCTGGACAAAATTCTGCCGATACCTAACCG
GCAAGTGTGGGTTTGTGGCCGTTCATACGACGGGGGGGCCGATTGCTACTTGGTAGCGGTTGCTCCTTTTCACGGCCAAG
TGGGCTTTGTCAAAGAGCCGTTGATGTACTACCGCATTCACGGCAAAAACAGGCGTAGCCGCAGCAAGAATTTTGAGCAC
GCTGTGCATTGTTACAAAGCGGTTGGACAGTTTGTCAACGACGCCGCCAAGCAAACCGGGGTGGCGGGCCGCTTCGATAT
CAGTCGTGACGGCCAGTATCTGGCACTCCTCTCTCTTCACGAAGGTGCCTCCCAATGTTCGCTTTTGAAGATTGTGGCTT
TGACCCTTGATGAGGCGAGGGGCACGGGTATGCGCCCCTGGGACGCCCTCAAGTGGATGCTACGCCGCTCGATCTGCGTC
GTCTCCCCTAAGGATGGCAAGGAAGTTTTGCTGCTCGGATTAAGCAGCTTTATCCGCACCAAGCTTGCTGCTCAAGTTCC
TGGGATGGCGCGCGCTTCCTCTACCCGCTCATGA

Upstream 100 bases:

>100_bases
GACGAGGCAATGTGGGCCGTCAAGCAATTCCCTCGGACTCAACAGAAACTGGCTGCAAGTAGGTAGTGAACGATGTACTT
TTGACATCTTGGAGTACACA

Downstream 100 bases:

>100_bases
GACGGGTAGCCTGATGGGAAACAAAATTGGCTGGATTAAACCCCTGCTCAACCGCCTGCCTTTGCGCGGACATCTGGCCA
GAGGAGGAATGTGGCTGCTG

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSTQSPSSHSPISSQPLVSIIICNYNFGHLIGQAIDSALKQTYRNCEIVVVDDASTDHSVEVIRSYGDQVRPIFLEKNSG
QAEAFNTGLRNSRGEIVCFLDSDDRYYENKVERVVEAFGEHPEWVQVSHSWVTVDAEDTKIGYGAKSLVQGDVRRMLLTW
GRYPCAITSALSYRRSVLDKILPIPNRQVWVCGRSYDGGADCYLVAVAPFHGQVGFVKEPLMYYRIHGKNRRSRSKNFEH
AVHCYKAVGQFVNDAAKQTGVAGRFDISRDGQYLALLSLHEGASQCSLLKIVALTLDEARGTGMRPWDALKWMLRRSICV
VSPKDGKEVLLLGLSSFIRTKLAAQVPGMARASSTRS

Sequences:

>Translated_357_residues
MSTQSPSSHSPISSQPLVSIIICNYNFGHLIGQAIDSALKQTYRNCEIVVVDDASTDHSVEVIRSYGDQVRPIFLEKNSG
QAEAFNTGLRNSRGEIVCFLDSDDRYYENKVERVVEAFGEHPEWVQVSHSWVTVDAEDTKIGYGAKSLVQGDVRRMLLTW
GRYPCAITSALSYRRSVLDKILPIPNRQVWVCGRSYDGGADCYLVAVAPFHGQVGFVKEPLMYYRIHGKNRRSRSKNFEH
AVHCYKAVGQFVNDAAKQTGVAGRFDISRDGQYLALLSLHEGASQCSLLKIVALTLDEARGTGMRPWDALKWMLRRSICV
VSPKDGKEVLLLGLSSFIRTKLAAQVPGMARASSTRS
>Mature_356_residues
STQSPSSHSPISSQPLVSIIICNYNFGHLIGQAIDSALKQTYRNCEIVVVDDASTDHSVEVIRSYGDQVRPIFLEKNSGQ
AEAFNTGLRNSRGEIVCFLDSDDRYYENKVERVVEAFGEHPEWVQVSHSWVTVDAEDTKIGYGAKSLVQGDVRRMLLTWG
RYPCAITSALSYRRSVLDKILPIPNRQVWVCGRSYDGGADCYLVAVAPFHGQVGFVKEPLMYYRIHGKNRRSRSKNFEHA
VHCYKAVGQFVNDAAKQTGVAGRFDISRDGQYLALLSLHEGASQCSLLKIVALTLDEARGTGMRPWDALKWMLRRSICVV
SPKDGKEVLLLGLSSFIRTKLAAQVPGMARASSTRS

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=106, Percent_Identity=32.0754716981132, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39726; Mature: 39594

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQSPSSHSPISSQPLVSIIICNYNFGHLIGQAIDSALKQTYRNCEIVVVDDASTDHSV
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
EVIRSYGDQVRPIFLEKNSGQAEAFNTGLRNSRGEIVCFLDSDDRYYENKVERVVEAFGE
HHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC
HPEWVQVSHSWVTVDAEDTKIGYGAKSLVQGDVRRMLLTWGRYPCAITSALSYRRSVLDK
CCCEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ILPIPNRQVWVCGRSYDGGADCYLVAVAPFHGQVGFVKEPLMYYRIHGKNRRSRSKNFEH
HCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCEEEEEEECCCCCCCCCCHHH
AVHCYKAVGQFVNDAAKQTGVAGRFDISRDGQYLALLSLHEGASQCSLLKIVALTLDEAR
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
GTGMRPWDALKWMLRRSICVVSPKDGKEVLLLGLSSFIRTKLAAQVPGMARASSTRS
CCCCCHHHHHHHHHHCCEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
STQSPSSHSPISSQPLVSIIICNYNFGHLIGQAIDSALKQTYRNCEIVVVDDASTDHSV
CCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
EVIRSYGDQVRPIFLEKNSGQAEAFNTGLRNSRGEIVCFLDSDDRYYENKVERVVEAFGE
HHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC
HPEWVQVSHSWVTVDAEDTKIGYGAKSLVQGDVRRMLLTWGRYPCAITSALSYRRSVLDK
CCCEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
ILPIPNRQVWVCGRSYDGGADCYLVAVAPFHGQVGFVKEPLMYYRIHGKNRRSRSKNFEH
HCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCEEEEEEECCCCCCCCCCHHH
AVHCYKAVGQFVNDAAKQTGVAGRFDISRDGQYLALLSLHEGASQCSLLKIVALTLDEAR
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
GTGMRPWDALKWMLRRSICVVSPKDGKEVLLLGLSSFIRTKLAAQVPGMARASSTRS
CCCCCHHHHHHHHHHCCEEEECCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840; 2111805 [H]