BacMap

Definition	Gloeobacter violaceus PCC 7421 chromosome, complete genome.
Accession	NC_005125
Length	4,659,019

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The map label for this gene is yhdF [H]

Identifier: 37519989

GI number: 37519989

Start: 441240

End: 442100

Strand: Direct

Name: yhdF [H]

Synonym: glr0420

Alternate gene names: 37519989

Gene position: 441240-442100 (Clockwise)

Preceding gene: 37519988

Following gene: 37519991

Centisome position: 9.47

GC content: 61.21

Gene sequence:

>861_bases
ATGTCTCAGTCCCAGCAACTCCAGCCGCCCCAGCAACAGGAGCGCCAGCCCGGCCTCGAATCGGAGATGACTCCGAAACC
CCAGGCCGACGATCCCAAATACCGCGGCAGCGGTAAACTCCAGGACAAAGTGGCGCTGATTACCGGCGGCGATTCCGGCA
TCGGCCGGGCGGTCGCCATCTTTTACGCCAAAGAAGGCGCGGATGTGGCCGTTCTTTATCTCGACGAGCACGACGATGCC
AAGGAGACCTGCCGTCTGGTACGAGAAATCGGTCAGCGTTGTCTCACCATTGCCGGGGATATCGGCGACGAGTCGTTCTG
TCGGCAGGCTGTCGCACAGGTGGTTGATGAATTCGGACGCCTCGATATCCTCGTCAACAACGCCGCCGAGCAGCACCCGC
AAAAGAGCATCGAGGACATCAGCGCCGAGCAACTGGAGCGCACCTTTCGCACCAACATTTTTTCTTTTTTCTATATGACC
AAAGCGGCGCTACCGCACCTCAAACCCGGCAGCGCCATCATCAACAGCACCTCGGTGACGGCCTACAAAGGTTCGCCGCA
ACTGCTCGACTACTCTTCCACCAAAGGGGCGATTGTCGCTTTTACCCGGTCTCTCTCCCAGGCACTGCTCGAAAAGGGCA
TTCGCGTCAACGGCGTCGCCCCCGGCCCGATCTGGACACCATTGATCCCCGCCTCGATGTCCCCGGAGCGCACCGCTTCC
CACGGCAGTTCTGCGCCGATGGGCCGGGTGGGTCAGCCGGAGGAAGTGGCGCCGAGCTACGTGTTTCTCGCCAGCGACGA
CTCGTCATACATCACGGGCCAGATCCTGCATCCCAACGGCGGCGAGGTGGTCAACGGCTGA

Upstream 100 bases:

>100_bases
CCGAGGCCTGCCGCCGGGCGGGGGAGTCCTGCCAGAAAATGACCTACGCCGATTCGTCCCTGGGCGCCACCGTCTAAATC
TATTTTCTGAGGTTGTCTTC

Downstream 100 bases:

>100_bases
GGCCGTACTCAATCCCTTCGATGACCGCCCGGCAACTGGCCTCGATAATGTTGGCCGACACCCCGATGGTCGTCCAGCGG
CCCAGACCGTCGCTCGATTC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSQSQQLQPPQQQERQPGLESEMTPKPQADDPKYRGSGKLQDKVALITGGDSGIGRAVAIFYAKEGADVAVLYLDEHDDA
KETCRLVREIGQRCLTIAGDIGDESFCRQAVAQVVDEFGRLDILVNNAAEQHPQKSIEDISAEQLERTFRTNIFSFFYMT
KAALPHLKPGSAIINSTSVTAYKGSPQLLDYSSTKGAIVAFTRSLSQALLEKGIRVNGVAPGPIWTPLIPASMSPERTAS
HGSSAPMGRVGQPEEVAPSYVFLASDDSSYITGQILHPNGGEVVNG

Sequences:

>Translated_286_residues
MSQSQQLQPPQQQERQPGLESEMTPKPQADDPKYRGSGKLQDKVALITGGDSGIGRAVAIFYAKEGADVAVLYLDEHDDA
KETCRLVREIGQRCLTIAGDIGDESFCRQAVAQVVDEFGRLDILVNNAAEQHPQKSIEDISAEQLERTFRTNIFSFFYMT
KAALPHLKPGSAIINSTSVTAYKGSPQLLDYSSTKGAIVAFTRSLSQALLEKGIRVNGVAPGPIWTPLIPASMSPERTAS
HGSSAPMGRVGQPEEVAPSYVFLASDDSSYITGQILHPNGGEVVNG
>Mature_285_residues
SQSQQLQPPQQQERQPGLESEMTPKPQADDPKYRGSGKLQDKVALITGGDSGIGRAVAIFYAKEGADVAVLYLDEHDDAK
ETCRLVREIGQRCLTIAGDIGDESFCRQAVAQVVDEFGRLDILVNNAAEQHPQKSIEDISAEQLERTFRTNIFSFFYMTK
AALPHLKPGSAIINSTSVTAYKGSPQLLDYSSTKGAIVAFTRSLSQALLEKGIRVNGVAPGPIWTPLIPASMSPERTASH
GSSAPMGRVGQPEEVAPSYVFLASDDSSYITGQILHPNGGEVVNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=191, Percent_Identity=37.696335078534, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=33.0612244897959, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=32.03125, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=32.3770491803279, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI10190704, Length=281, Percent_Identity=32.0284697508897, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI19923817, Length=267, Percent_Identity=30.3370786516854, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=30.952380952381, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI31542939, Length=209, Percent_Identity=32.5358851674641, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=27.7777777777778, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=29.2887029288703, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI210032110, Length=184, Percent_Identity=31.5217391304348, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=28.2258064516129, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=30.4, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI142976729, Length=234, Percent_Identity=28.6324786324786, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=34.7058823529412, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7706318, Length=217, Percent_Identity=27.6497695852535, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI31543615, Length=177, Percent_Identity=31.0734463276836, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI310128830, Length=176, Percent_Identity=32.9545454545455, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI310115468, Length=176, Percent_Identity=32.9545454545455, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30.5263157894737, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI4503301, Length=258, Percent_Identity=28.2945736434109, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI83715985, Length=252, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40807363, Length=213, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4504505, Length=190, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI20149619, Length=237, Percent_Identity=28.6919831223629, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI32455239, Length=177, Percent_Identity=30.5084745762712, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI5031765, Length=177, Percent_Identity=30.5084745762712, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1789378, Length=275, Percent_Identity=45.8181818181818, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=37.6984126984127, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.7935222672065, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=34.6153846153846, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=32.6530612244898, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=31.3008130081301, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=30.9917355371901, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=31.4516129032258, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=33.0543933054393, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=28.3464566929134, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=26.0869565217391, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788891, Length=244, Percent_Identity=27.0491803278689, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787545, Length=254, Percent_Identity=25.1968503937008, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=27.0916334661355, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=26.8199233716475, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=34, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=34.2307692307692, Blast_Score=124, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=36.0153256704981, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=32.046332046332, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=34.5588235294118, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=33.7349397590361, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=33.5849056603774, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=32.7137546468402, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=31.5384615384615, Blast_Score=119, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=31.8181818181818, Blast_Score=118, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=34.469696969697, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=32.183908045977, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=34.7328244274809, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=32.824427480916, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=33.206106870229, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=32.3886639676113, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=34.469696969697, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=33.0827067669173, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=32.9317269076305, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=30.3846153846154, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=30.9236947791165, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=30.9803921568627, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=31.0344827586207, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17536025, Length=270, Percent_Identity=29.6296296296296, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.0344827586207, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=30.46875, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=31.7460317460317, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=27.8225806451613, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI212645366, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=203, Percent_Identity=31.0344827586207, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=29.2307692307692, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=241, Percent_Identity=27.3858921161826, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=195, Percent_Identity=28.7179487179487, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=240, Percent_Identity=27.0833333333333, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=26.9076305220884, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=232, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=26.0204081632653, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=29, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322226, Length=206, Percent_Identity=28.1553398058252, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=248, Percent_Identity=26.6129032258064, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322861, Length=264, Percent_Identity=25.3787878787879, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=35.6, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=35.7429718875502, Blast_Score=124, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=34.2857142857143, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=31.7460317460317, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=30.8943089430894, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=32.295719844358, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=33.8645418326693, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=27.5590551181102, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=29.1497975708502, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24641232, Length=208, Percent_Identity=27.8846153846154, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581726, Length=198, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281364892, Length=189, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=26.984126984127, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=26.984126984127, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=29.8245614035088, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45554248, Length=216, Percent_Identity=28.2407407407407, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24640117, Length=216, Percent_Identity=28.2407407407407, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221510726, Length=188, Percent_Identity=30.3191489361702, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30805; Mature: 30674

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQSQQLQPPQQQERQPGLESEMTPKPQADDPKYRGSGKLQDKVALITGGDSGIGRAVAI
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE
FYAKEGADVAVLYLDEHDDAKETCRLVREIGQRCLTIAGDIGDESFCRQAVAQVVDEFGR
EEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHHHHCC
LDILVNNAAEQHPQKSIEDISAEQLERTFRTNIFSFFYMTKAALPHLKPGSAIINSTSVT
EEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEE
AYKGSPQLLDYSSTKGAIVAFTRSLSQALLEKGIRVNGVAPGPIWTPLIPASMSPERTAS
EECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHC
HGSSAPMGRVGQPEEVAPSYVFLASDDSSYITGQILHPNGGEVVNG
CCCCCCCCCCCCCHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SQSQQLQPPQQQERQPGLESEMTPKPQADDPKYRGSGKLQDKVALITGGDSGIGRAVAI
CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEE
FYAKEGADVAVLYLDEHDDAKETCRLVREIGQRCLTIAGDIGDESFCRQAVAQVVDEFGR
EEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHEEHHCCCCCHHHHHHHHHHHHHHHCC
LDILVNNAAEQHPQKSIEDISAEQLERTFRTNIFSFFYMTKAALPHLKPGSAIINSTSVT
EEEEECCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEE
AYKGSPQLLDYSSTKGAIVAFTRSLSQALLEKGIRVNGVAPGPIWTPLIPASMSPERTAS
EECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHC
HGSSAPMGRVGQPEEVAPSYVFLASDDSSYITGQILHPNGGEVVNG
CCCCCCCCCCCCCHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]