Click here to switch to the map view.

The map label for this gene is pchR [H]

Identifier: 37519904

GI number: 37519904

Start: 348289

End: 349272

Strand: Reverse

Name: pchR [H]

Synonym: gll0335

Alternate gene names: 37519904

Gene position: 349272-348289 (Counterclockwise)

Preceding gene: 37519905

Following gene: 37519903

Centisome position: 7.5

GC content: 56.81

Gene sequence:

>984_bases
GTGACTATTTCCATGTCCGAGCAAGCCTCCGCCGATTTGGACGAAGAGCTTCTTGCACAGTCACAATGCCCAGACCCGCA
AGACGAACTGGATCTGTCGCTCCACTATCCGCCGTGGTTGGCCAACGGTTTTTACCGGAATATTGAACTGCGCGAGGGGT
TGGAATTAACCCTCCTCGATTGTCGACTGTGCGATCGCTGGGAATTCGCTTATGCGGAACAGGAGAGCTGGCTGTCTTGT
CATTTCCACCTATCGGGGGAGCACCAGGACGCCTGCACCGAGGTGGGCAATCTGGAATACGCCCTTTACGGCAGCGGTCT
GGCCCCCAAGGGAACAACCATTTGCCCGGATCGATACCACATTTTAGAAGTATATATCTCGATGCAGTCGGAAGTGTTAA
TGTCATTCGTCGGTAGGAATGGTGAACTGCCGCCGGAGTTCAAGCACTTGATTTGCAAGCCGGACCAGCAGTACTACACC
CGCGTGGGAACGATCTCGCCTGCCATGCAGCGGGTGCTTTGGCAAATCGTCCGCTGTCCGTACTTGGGCCTCGCCAAGCG
CATGTACCTGGAAGGCAAGGCGCTGGAGGTGGCTGCGCTGGTCTTGGAGCAGGAGTGCGAGGTGCAGCGGGGACGGCGAG
CGCTGCACAATCTGGAGCCTGATTATGTCGATCGCATCTGTCGCGCCCGCGAAATTGTACTCCAGAATTTGGATCGGCCG
CTTTCATTGGTCGAACTGGCACGGCAGGTGGAGTTGAACGATTTTTTGCTCAAGGGCGGGTTCCGGCGGGTATTCGGTAA
GACGGTGTTCGGTTATTTGCGCGACTATCGGCTGGAGCAGGCGCGCCAGTTGCTGCTGTCGGGCAAGACGAGCGTGGCCG
AGGTGATGCGGGCGGTAGGCTTCGCTGATCGTGGGTATTTTGCTGAGGCGTTTCGCAAGCGGTTTGGGGTCAATCCCAAA
GACTACACGAAAGAACCGATGTAA

Upstream 100 bases:

>100_bases
AACGTTCCTTTTCAAGAACCTGCTGAATGCCCAGTACAGTAAAATCACTAATGAAATCATCTTTTGATAAGCTGTTTCTC
TAATCCAAGGACATGTCGCC

Downstream 100 bases:

>100_bases
TCGTCCGTTTGTAAAGATTGCAAGCGGCCACCCGGGACGGGTGGGTTGTCGTTGCATCCGTCGGCAACCCGATCGGTGCT
GGGAAGAGTGGCGGGATTGC

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MTISMSEQASADLDEELLAQSQCPDPQDELDLSLHYPPWLANGFYRNIELREGLELTLLDCRLCDRWEFAYAEQESWLSC
HFHLSGEHQDACTEVGNLEYALYGSGLAPKGTTICPDRYHILEVYISMQSEVLMSFVGRNGELPPEFKHLICKPDQQYYT
RVGTISPAMQRVLWQIVRCPYLGLAKRMYLEGKALEVAALVLEQECEVQRGRRALHNLEPDYVDRICRAREIVLQNLDRP
LSLVELARQVELNDFLLKGGFRRVFGKTVFGYLRDYRLEQARQLLLSGKTSVAEVMRAVGFADRGYFAEAFRKRFGVNPK
DYTKEPM

Sequences:

>Translated_327_residues
MTISMSEQASADLDEELLAQSQCPDPQDELDLSLHYPPWLANGFYRNIELREGLELTLLDCRLCDRWEFAYAEQESWLSC
HFHLSGEHQDACTEVGNLEYALYGSGLAPKGTTICPDRYHILEVYISMQSEVLMSFVGRNGELPPEFKHLICKPDQQYYT
RVGTISPAMQRVLWQIVRCPYLGLAKRMYLEGKALEVAALVLEQECEVQRGRRALHNLEPDYVDRICRAREIVLQNLDRP
LSLVELARQVELNDFLLKGGFRRVFGKTVFGYLRDYRLEQARQLLLSGKTSVAEVMRAVGFADRGYFAEAFRKRFGVNPK
DYTKEPM
>Mature_326_residues
TISMSEQASADLDEELLAQSQCPDPQDELDLSLHYPPWLANGFYRNIELREGLELTLLDCRLCDRWEFAYAEQESWLSCH
FHLSGEHQDACTEVGNLEYALYGSGLAPKGTTICPDRYHILEVYISMQSEVLMSFVGRNGELPPEFKHLICKPDQQYYTR
VGTISPAMQRVLWQIVRCPYLGLAKRMYLEGKALEVAALVLEQECEVQRGRRALHNLEPDYVDRICRAREIVLQNLDRPL
SLVELARQVELNDFLLKGGFRRVFGKTVFGYLRDYRLEQARQLLLSGKTSVAEVMRAVGFADRGYFAEAFRKRFGVNPKD
YTKEPM

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37664; Mature: 37532

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISMSEQASADLDEELLAQSQCPDPQDELDLSLHYPPWLANGFYRNIELREGLELTLLD
CCCCCCCHHCCCCCHHHHHHCCCCCCHHHCCEEECCCCHHHCCCEECCCHHCCCEEEEEE
CRLCDRWEFAYAEQESWLSCHFHLSGEHQDACTEVGNLEYALYGSGLAPKGTTICPDRYH
CHHHCCHHHHHHCCCCEEEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHH
ILEVYISMQSEVLMSFVGRNGELPPEFKHLICKPDQQYYTRVGTISPAMQRVLWQIVRCP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
YLGLAKRMYLEGKALEVAALVLEQECEVQRGRRALHNLEPDYVDRICRAREIVLQNLDRP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
LSLVELARQVELNDFLLKGGFRRVFGKTVFGYLRDYRLEQARQLLLSGKTSVAEVMRAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
FADRGYFAEAFRKRFGVNPKDYTKEPM
CCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TISMSEQASADLDEELLAQSQCPDPQDELDLSLHYPPWLANGFYRNIELREGLELTLLD
CCCCCCHHCCCCCHHHHHHCCCCCCHHHCCEEECCCCHHHCCCEECCCHHCCCEEEEEE
CRLCDRWEFAYAEQESWLSCHFHLSGEHQDACTEVGNLEYALYGSGLAPKGTTICPDRYH
CHHHCCHHHHHHCCCCEEEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHH
ILEVYISMQSEVLMSFVGRNGELPPEFKHLICKPDQQYYTRVGTISPAMQRVLWQIVRCP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
YLGLAKRMYLEGKALEVAALVLEQECEVQRGRRALHNLEPDYVDRICRAREIVLQNLDRP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
LSLVELARQVELNDFLLKGGFRRVFGKTVFGYLRDYRLEQARQLLLSGKTSVAEVMRAVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
FADRGYFAEAFRKRFGVNPKDYTKEPM
CCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]