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The map label for this gene is pchR [H]

Identifier: 37519889

GI number: 37519889

Start: 331223

End: 332194

Strand: Reverse

Name: pchR [H]

Synonym: gll0320

Alternate gene names: 37519889

Gene position: 332194-331223 (Counterclockwise)

Preceding gene: 37519890

Following gene: 37519888

Centisome position: 7.13

GC content: 62.14

Gene sequence:

>972_bases
GTGACTATCTCCATGTCTGAGCAAGTCTTGGCTGATTTGGGCCAAGAGCTTAACGCGCACACACAATACCCGGATCCGCA
AGACGAACTGGATCTGCTCTGGCGCTTGCCGTCGTGGTTGGCCGAAGGTTGTTTTCGAGAAATTGCCTTGCGCGAGGGAT
TGGCATTGTGCATCGAAAATTTCCGGCTGCGCGATCGCTGGGAGCTTGCTTTGCCGGAACGGGAGGAATGCCTGTGTTTC
CATTTCCACCTGTCGGGGGAGCACCGGGACGGCAGCACCGAGGTGGGCAACCTCGAATACGCCCTCTACGGCAGCGGTCT
GGCTCCCAAGCAAACCATGGCCGGCCCGGATCACTTTCCTATCCTGGAGGTGCACATCTGGATGCAGCCGGAGGTGCTGG
TTGCCTTCGTTGGCCACAATGGAGAACTGCCGACGGAGTTCGCGCACCTGGTCCGCCCAGCGGACCAAAAATACTACACC
CGCGTGGGAACGGTCTCGCCCGCCCTGCAGCAGATCCTTCGGCAAATCGTCCGCTGTCCGTATTCGGGCCTCGCCAAGCG
GCTGTATCTGGAAGCCAAGGCGCTGGAGGCGGCGGCGCTGGTCTTGGAGCACGAGCAGGAGGTGCGGCAGGGGCGATGCC
TGCAGCATGCGTTGCAATCCGATTGCGTCGAGCGCATCTGTCGCGCCCGCGAAATCGTGCTGCAGAATCTGGATCGGCCG
CTGGCTTTGGCCGAGCTGGCGCGGCGGGTGGGACTGAACGAATGTGCGCTCAAGCGCGGTTTCCGGCAGGTGTTCGGCAC
AACGGTGTTCGGCTATCTGCGCGACTACCGGCTGGAGCAGGCGCGGCAGTTGCTGCTGTCGGGCGAGGCGAACGTGTCTG
GGGTGATGCAGGCGGTGGGCTTTGCGGATCGCGGCCATTTCGCGGCGGCGTTTCGCAAGAAGTTCGGGGTCGCTCCGAAA
GATTACCGATAA

Upstream 100 bases:

>100_bases
ACGCATCGGCCTTCCAAACCCACTGCTTTCAGCCGCGGGCAAGGGCTTTAATGCGATAGTCTTTTGATAAGCTGTTTGGC
TCATCTCAAGGGGTGTCGCC

Downstream 100 bases:

>100_bases
GGCAGATGTAAAGATTGCGGTCGGTCCCCCGGGACGAACGGGTCTGTGATTCGCCCGGCAGCAGAACGCTCGGTGCCGCG
CAGACCAGCGGGATTGGGAG

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MTISMSEQVLADLGQELNAHTQYPDPQDELDLLWRLPSWLAEGCFREIALREGLALCIENFRLRDRWELALPEREECLCF
HFHLSGEHRDGSTEVGNLEYALYGSGLAPKQTMAGPDHFPILEVHIWMQPEVLVAFVGHNGELPTEFAHLVRPADQKYYT
RVGTVSPALQQILRQIVRCPYSGLAKRLYLEAKALEAAALVLEHEQEVRQGRCLQHALQSDCVERICRAREIVLQNLDRP
LALAELARRVGLNECALKRGFRQVFGTTVFGYLRDYRLEQARQLLLSGEANVSGVMQAVGFADRGHFAAAFRKKFGVAPK
DYR

Sequences:

>Translated_323_residues
MTISMSEQVLADLGQELNAHTQYPDPQDELDLLWRLPSWLAEGCFREIALREGLALCIENFRLRDRWELALPEREECLCF
HFHLSGEHRDGSTEVGNLEYALYGSGLAPKQTMAGPDHFPILEVHIWMQPEVLVAFVGHNGELPTEFAHLVRPADQKYYT
RVGTVSPALQQILRQIVRCPYSGLAKRLYLEAKALEAAALVLEHEQEVRQGRCLQHALQSDCVERICRAREIVLQNLDRP
LALAELARRVGLNECALKRGFRQVFGTTVFGYLRDYRLEQARQLLLSGEANVSGVMQAVGFADRGHFAAAFRKKFGVAPK
DYR
>Mature_322_residues
TISMSEQVLADLGQELNAHTQYPDPQDELDLLWRLPSWLAEGCFREIALREGLALCIENFRLRDRWELALPEREECLCFH
FHLSGEHRDGSTEVGNLEYALYGSGLAPKQTMAGPDHFPILEVHIWMQPEVLVAFVGHNGELPTEFAHLVRPADQKYYTR
VGTVSPALQQILRQIVRCPYSGLAKRLYLEAKALEAAALVLEHEQEVRQGRCLQHALQSDCVERICRAREIVLQNLDRPL
ALAELARRVGLNECALKRGFRQVFGTTVFGYLRDYRLEQARQLLLSGEANVSGVMQAVGFADRGHFAAAFRKKFGVAPKD
YR

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36655; Mature: 36523

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTISMSEQVLADLGQELNAHTQYPDPQDELDLLWRLPSWLAEGCFREIALREGLALCIEN
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRLRDRWELALPEREECLCFHFHLSGEHRDGSTEVGNLEYALYGSGLAPKQTMAGPDHFP
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCC
ILEVHIWMQPEVLVAFVGHNGELPTEFAHLVRPADQKYYTRVGTVSPALQQILRQIVRCP
EEEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
YSGLAKRLYLEAKALEAAALVLEHEQEVRQGRCLQHALQSDCVERICRAREIVLQNLDRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LALAELARRVGLNECALKRGFRQVFGTTVFGYLRDYRLEQARQLLLSGEANVSGVMQAVG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
FADRGHFAAAFRKKFGVAPKDYR
CCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TISMSEQVLADLGQELNAHTQYPDPQDELDLLWRLPSWLAEGCFREIALREGLALCIEN
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRLRDRWELALPEREECLCFHFHLSGEHRDGSTEVGNLEYALYGSGLAPKQTMAGPDHFP
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCC
ILEVHIWMQPEVLVAFVGHNGELPTEFAHLVRPADQKYYTRVGTVSPALQQILRQIVRCP
EEEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCC
YSGLAKRLYLEAKALEAAALVLEHEQEVRQGRCLQHALQSDCVERICRAREIVLQNLDRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LALAELARRVGLNECALKRGFRQVFGTTVFGYLRDYRLEQARQLLLSGEANVSGVMQAVG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
FADRGHFAAAFRKKFGVAPKDYR
CCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]