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The map label for this gene is ycf37

Identifier: 37519855

GI number: 37519855

Start: 297452

End: 297973

Strand: Reverse

Name: ycf37

Synonym: gvip023

Alternate gene names: NA

Gene position: 297973-297452 (Counterclockwise)

Preceding gene: 37519858

Following gene: 37519854

Centisome position: 6.4

GC content: 61.11

Gene sequence:

>522_bases
ATGAACGATAATCTTCGCATTTTCTATTTGATCGGTCTGGCGGCGCTGCTGGGCTGGTTGGCATGGCAGGTCTTCCGGCA
GGTGCGTCGCAATGTCGGGGTCGAAGGGGTGATCAACAAACTCCAGCCCAAGGTCAAAGGCGGCCAGGCGAGCGCCCAGG
ATTATTACGAGCTGGGCTGCGCCTATCTTGAGAAGCGGCTATATATGGACGCCACCGAGAACTTTAAAAAAGCCCTCCAG
GCCGAGCCCGAGTTCGCTGAGGCCCACAACAACCTCGGCTTTTGCCACTTCCAGCAGCGCCAATACGACCTGGCCATCCG
CGAGTACAAAGACGCCGTCCGCTTCAAACCCGATTACGTCTCCGCCCTCAACAACCTGGGCCACGCCCTGGAGATGAAGG
GCCAGGCCCTCCAGGCCCTCGAAGCCTACGATCAGGTGCTCACCCTCCAGCCCGCCAACGCCACCGCCGAGCGGCGGGCG
CGGGCTTTGCGCAAACGCGTTCCCTCCACCGCCGATGGATAA

Upstream 100 bases:

>100_bases
ACACAACTTCATATTTCCATGGTGCCCCAGCTTCGGCGCGCGGGCTCGTCCTCCGGGGCTGTGTTAGCTTGAACAGTGTG
CGGGCGGACGGTGCGGGGCC

Downstream 100 bases:

>100_bases
CGACGCAGAGTACTACGTGCTGCTGCGCACCGGCCAGGAGGAGCAGTTCCTCACCGAAGTCGAACTGCAGGCCGTTCTCG
CCGATGCCGTTCGGCGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Photosystem I Assembly Related Protein Ycf; Tetratricopeptide Repeat Domain Protein; TPR Repeat-Containing Photosystem I Assembly Protein Ycf; Tetratricopeptide TPR_2 Repeat Protein; Photosystem I Assembly Protein; Peptidase S1 And S6 Chymotrypsin/Hap; TPR Domain-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Photosystem I Assembly Related Protein; Tetratricopeptide Repeat Protein

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MNDNLRIFYLIGLAALLGWLAWQVFRQVRRNVGVEGVINKLQPKVKGGQASAQDYYELGCAYLEKRLYMDATENFKKALQ
AEPEFAEAHNNLGFCHFQQRQYDLAIREYKDAVRFKPDYVSALNNLGHALEMKGQALQALEAYDQVLTLQPANATAERRA
RALRKRVPSTADG

Sequences:

>Translated_173_residues
MNDNLRIFYLIGLAALLGWLAWQVFRQVRRNVGVEGVINKLQPKVKGGQASAQDYYELGCAYLEKRLYMDATENFKKALQ
AEPEFAEAHNNLGFCHFQQRQYDLAIREYKDAVRFKPDYVSALNNLGHALEMKGQALQALEAYDQVLTLQPANATAERRA
RALRKRVPSTADG
>Mature_173_residues
MNDNLRIFYLIGLAALLGWLAWQVFRQVRRNVGVEGVINKLQPKVKGGQASAQDYYELGCAYLEKRLYMDATENFKKALQ
AEPEFAEAHNNLGFCHFQQRQYDLAIREYKDAVRFKPDYVSALNNLGHALEMKGQALQALEAYDQVLTLQPANATAERRA
RALRKRVPSTADG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI115532692, Length=104, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115532690, Length=104, Percent_Identity=34.6153846153846, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19666; Mature: 19666

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNLRIFYLIGLAALLGWLAWQVFRQVRRNVGVEGVINKLQPKVKGGQASAQDYYELGC
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
AYLEKRLYMDATENFKKALQAEPEFAEAHNNLGFCHFQQRQYDLAIREYKDAVRFKPDYV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHH
SALNNLGHALEMKGQALQALEAYDQVLTLQPANATAERRARALRKRVPSTADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNDNLRIFYLIGLAALLGWLAWQVFRQVRRNVGVEGVINKLQPKVKGGQASAQDYYELGC
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
AYLEKRLYMDATENFKKALQAEPEFAEAHNNLGFCHFQQRQYDLAIREYKDAVRFKPDYV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHH
SALNNLGHALEMKGQALQALEAYDQVLTLQPANATAERRARALRKRVPSTADG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA