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The map label for this gene is ctpA [H]

Identifier: 37519688

GI number: 37519688

Start: 116079

End: 117365

Strand: Reverse

Name: ctpA [H]

Synonym: gll0119

Alternate gene names: 37519688

Gene position: 117365-116079 (Counterclockwise)

Preceding gene: 37519692

Following gene: 37519687

Centisome position: 2.52

GC content: 63.17

Gene sequence:

>1287_bases
ATGCAAGATTTCTTTCGAAAGAGTGTCCTGCTCACGGTCATCCTCAGCCTCGTCGGCTCCGCCGCGGTGACGGCCGCCCC
CAAGCAGCCCGTCAAGCTGCGCGCCGAGTACGAAGCCAGGCTCGAAGATTCACCCAAGGCGATCGTCGATGAAGTCTGGC
AGACGGTGGACCGCGAGTTTGTCGATCCGACCTTCAACAAACAAAACTGGATAGCGGCGCGCGAGCAGTTGCTGGGCCGC
GACTACAAAAGCAAAGAAGAAGCCTACGAGGCGATTCGCAATTCCTTGAAGGTGCTGGGCGATCCGTACACCCGCTTTCT
CGACCCGCGCGAATTTCAGGCGTTGCGCGATCAGACCAGCGGCGAGCTGGTGGGGGTCGGCATCCAACTGGGGGTCTCCC
AGGCGAGCAAACTGCCGGTGGTGGTCAAAACCCTCGAAGATAGCCCCGCCAGCCGCTCGGGCATCCAGGCCAAAGACGAG
TTGCTCGCCGTCGACGGCAAAGCGACCGCCAAGCTCGAAATCGGTGAGGTCTCCCGGATGATCCGCGGCGATCGCGGCAC
CCAGGTGACGCTGTCGGTGCTGCGCTCGGGGCAGAAGATGAGTTTTACGATCACCCGTGCTCCGATCGAGCTGAAGGTGG
TCACCAGCTCCCTCAAAGAAGAAAATGGCCGCAAAGTAGGCTACATCCGCCTTGCGGAATTTTCTGAAAAGGCTCCCAAC
GAGATGCAGCGGGCCTTTGCCAAGCTGAGCGAAGCAGGGGTGCAAGGCTGGGTACTCGACCTGCGCGGCAACCCCGGTGG
CCTGCTCGATGCCGCCACCCGCGTGGCCAGCCTGGTGCTCGATCAAGGCACGATCGTCTCGACGGTCGATCGCGCCGGCA
CCCAGGATCAACTGACCGCCGACCGCCATCCGGTGACCAACCTGCCCCTGGTGGTGCTGGTCGATCAAGGTTCGGCCTCG
GCCAGCGAGATTCTCGCCGGCGCCATCCAGGACAACCGGCGCGGCACCCTGGTGGGCATGAAGACCTTCGGCAAAGGGGT
CATCCAGCAGGTGAACGCCCTCTCCGACGGTTCCGGGGTAAACGTCACCATCGCCCACTACCTGACCCCCTCCGGCAACG
ACATCCACAAAAAGGGCATCCAGCCCGATGTGGTCGTGGCCTTTCCGGAGGAGGCGCGCAAGGCTCCCATCGAGCCTGCC
ACCGGCGCCGACATCCAGTACCAGCGCGCTGTGACGGTGCTGGCCAAGCTCATCGAGACCAAGCCGGCCACCAACGCCCG
CAAGTAA

Upstream 100 bases:

>100_bases
AGATAGACTGGCCCTAATTGGTGCGGGCACTTCGGGGCCACCCGTGGCGTCTTGCAGTCCAGACCATCACTACCAGCACA
GCGCAATGATCGAAAACACT

Downstream 100 bases:

>100_bases
CTCGCTGTTTCGAGCGTCCCGGTCCGCAACCGTGGGCCGGGACGGTTTTCCTCAAAGATCCCCGGAAGGGAATGGGACAA
TAGAAACAACACCAGACGAG

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MQDFFRKSVLLTVILSLVGSAAVTAAPKQPVKLRAEYEARLEDSPKAIVDEVWQTVDREFVDPTFNKQNWIAAREQLLGR
DYKSKEEAYEAIRNSLKVLGDPYTRFLDPREFQALRDQTSGELVGVGIQLGVSQASKLPVVVKTLEDSPASRSGIQAKDE
LLAVDGKATAKLEIGEVSRMIRGDRGTQVTLSVLRSGQKMSFTITRAPIELKVVTSSLKEENGRKVGYIRLAEFSEKAPN
EMQRAFAKLSEAGVQGWVLDLRGNPGGLLDAATRVASLVLDQGTIVSTVDRAGTQDQLTADRHPVTNLPLVVLVDQGSAS
ASEILAGAIQDNRRGTLVGMKTFGKGVIQQVNALSDGSGVNVTIAHYLTPSGNDIHKKGIQPDVVVAFPEEARKAPIEPA
TGADIQYQRAVTVLAKLIETKPATNARK

Sequences:

>Translated_428_residues
MQDFFRKSVLLTVILSLVGSAAVTAAPKQPVKLRAEYEARLEDSPKAIVDEVWQTVDREFVDPTFNKQNWIAAREQLLGR
DYKSKEEAYEAIRNSLKVLGDPYTRFLDPREFQALRDQTSGELVGVGIQLGVSQASKLPVVVKTLEDSPASRSGIQAKDE
LLAVDGKATAKLEIGEVSRMIRGDRGTQVTLSVLRSGQKMSFTITRAPIELKVVTSSLKEENGRKVGYIRLAEFSEKAPN
EMQRAFAKLSEAGVQGWVLDLRGNPGGLLDAATRVASLVLDQGTIVSTVDRAGTQDQLTADRHPVTNLPLVVLVDQGSAS
ASEILAGAIQDNRRGTLVGMKTFGKGVIQQVNALSDGSGVNVTIAHYLTPSGNDIHKKGIQPDVVVAFPEEARKAPIEPA
TGADIQYQRAVTVLAKLIETKPATNARK
>Mature_428_residues
MQDFFRKSVLLTVILSLVGSAAVTAAPKQPVKLRAEYEARLEDSPKAIVDEVWQTVDREFVDPTFNKQNWIAAREQLLGR
DYKSKEEAYEAIRNSLKVLGDPYTRFLDPREFQALRDQTSGELVGVGIQLGVSQASKLPVVVKTLEDSPASRSGIQAKDE
LLAVDGKATAKLEIGEVSRMIRGDRGTQVTLSVLRSGQKMSFTITRAPIELKVVTSSLKEENGRKVGYIRLAEFSEKAPN
EMQRAFAKLSEAGVQGWVLDLRGNPGGLLDAATRVASLVLDQGTIVSTVDRAGTQDQLTADRHPVTNLPLVVLVDQGSAS
ASEILAGAIQDNRRGTLVGMKTFGKGVIQQVNALSDGSGVNVTIAHYLTPSGNDIHKKGIQPDVVVAFPEEARKAPIEPA
TGADIQYQRAVTVLAKLIETKPATNARK

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=311, Percent_Identity=31.1897106109325, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46349; Mature: 46349

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFFRKSVLLTVILSLVGSAAVTAAPKQPVKLRAEYEARLEDSPKAIVDEVWQTVDREF
CCHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHH
VDPTFNKQNWIAAREQLLGRDYKSKEEAYEAIRNSLKVLGDPYTRFLDPREFQALRDQTS
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCC
GELVGVGIQLGVSQASKLPVVVKTLEDSPASRSGIQAKDELLAVDGKATAKLEIGEVSRM
CCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHH
IRGDRGTQVTLSVLRSGQKMSFTITRAPIELKVVTSSLKEENGRKVGYIRLAEFSEKAPN
HCCCCCCEEEHHHHHCCCCEEEEEEECCEEEEEEHHHHHHCCCCEEEEEEEEHHHCCCHH
EMQRAFAKLSEAGVQGWVLDLRGNPGGLLDAATRVASLVLDQGTIVSTVDRAGTQDQLTA
HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCCCC
DRHPVTNLPLVVLVDQGSASASEILAGAIQDNRRGTLVGMKTFGKGVIQQVNALSDGSGV
CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCC
NVTIAHYLTPSGNDIHKKGIQPDVVVAFPEEARKAPIEPATGADIQYQRAVTVLAKLIET
EEEEEEEECCCCCCHHHCCCCCCEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
KPATNARK
CCCCCCCC
>Mature Secondary Structure
MQDFFRKSVLLTVILSLVGSAAVTAAPKQPVKLRAEYEARLEDSPKAIVDEVWQTVDREF
CCHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHH
VDPTFNKQNWIAAREQLLGRDYKSKEEAYEAIRNSLKVLGDPYTRFLDPREFQALRDQTS
CCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHCCCC
GELVGVGIQLGVSQASKLPVVVKTLEDSPASRSGIQAKDELLAVDGKATAKLEIGEVSRM
CCEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEEHHHHHHH
IRGDRGTQVTLSVLRSGQKMSFTITRAPIELKVVTSSLKEENGRKVGYIRLAEFSEKAPN
HCCCCCCEEEHHHHHCCCCEEEEEEECCEEEEEEHHHHHHCCCCEEEEEEEEHHHCCCHH
EMQRAFAKLSEAGVQGWVLDLRGNPGGLLDAATRVASLVLDQGTIVSTVDRAGTQDQLTA
HHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEHHHCCCCCCCCCC
DRHPVTNLPLVVLVDQGSASASEILAGAIQDNRRGTLVGMKTFGKGVIQQVNALSDGSGV
CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCC
NVTIAHYLTPSGNDIHKKGIQPDVVVAFPEEARKAPIEPATGADIQYQRAVTVLAKLIET
EEEEEEEECCCCCCHHHCCCCCCEEEECCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
KPATNARK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]