| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is murC
Identifier: 34499797
GI number: 34499797
Start: 4681235
End: 4682629
Strand: Reverse
Name: murC
Synonym: CV_4342
Alternate gene names: 34499797
Gene position: 4682629-4681235 (Counterclockwise)
Preceding gene: 34499798
Following gene: 34499796
Centisome position: 98.56
GC content: 69.68
Gene sequence:
>1395_bases ATGAAACACAGGGTCAAACACATACATTTCGTGGGCATAGGCGGCGTCGGCATGTGCGGCATCGCCGAGGTGCTGCACGG CCTCGGCTACACCGTGTCCGGCTCGGACATGGCCGACGGCGCGACCACCAAGCGGCTGGCCGCCGAAGGCGTGCGCGTGT TTTTCGGCCACGACGCCACCTATGTGGAAGGCGCGGACGTGGTGGTGACTTCCACCGCGGTGAAGGCCGACAACCCGGAA GTGCTGGCGGCGCGCGACAAGCGCATCCCGGTGATCCCGCGCGCGCTGATGCTGGCCGAGCTGATGCGCTTCAAGCAGGG CATCGCCATCGCCGGCACCCACGGCAAGACCACCACCACCAGCCTGACCGCGTCGGTGCTGGGCGCGGCCGGGCTGGACC CGACCTTCGTCATCGGCGGCAAGCTGACCGCGGCCGGCACCAACGCCAAGCTGGGCCTGGGCGAGTTCCTGGTGGCCGAG GCCGACGAGTCGGACGCGTCCTTCCTGCACCTGACCCCGGTGATGGCGGTGGTGACCAATATCGACGCCGACCACATGGA CACCTACGACCACAGTTTCGACAAGCTGAAGCAGGCCTTCGTCGATTTCCTGCAGCGGATGCCGTTCTACGGCCGCGCGG TGCTGTGCGTCGACGACCCGAACGTGCGCGAGATCCGCGAGCGCGTCACCAAGCCGGTGACCACCTACGGCCTCGACGAT TCGGCCGACATCTATGCCGAGAACGTGCGCGCGGCCGCCGGCCAGATGCATTTCGACGTGGTGGTGAAGAACGGCGCCAT CACCCGCTTCCCGCTGGTGCTGAACCTGCCGGGCCGCCACAACGTGCTGAACGCGCTGTCGGCGATCGCCATCGGCCTGG AATGCGGCGCCAGCATCGAGGCCATCCAGAAGGGCCTGTCCGAGTTCGCCGGCGTCGGCCGCCGCTTCCAGCGCTACGGC GAAGTGAAAGCCCAGGACGGCGGCAGCTTCACGCTGATCGACGACTACGGCCACCACCCGGTGGAAATGGCCGCCACGCT GGCCGCGGTGCGCGGGGCCTTCCCGGACCGCCGGCTGCTGCTGGCCTTCCAGCCGCACCGCTACACTCGCACCCGCGACC TGTTCGAAGACTTCGTCAAGGTGCTGTCCGGCGTCGACGCGCTGCTGCTGTCCGAGGTGTACGCGGCCGGCGAGGCGCCC ATCGTGGCGGCCGACGGCCGGGCGCTGGCGCGCGCGGTGCGCGTGGGCGGCAAGGTGGAGCCGCTGTTCGTCGAGGACAT CGCCGACATGCCGCAGGCCATCCTGGACGCCGCCCGCGACGGCGACGTGGTGGTGACCATGGGCGCCGGCTCGGTGGGCG CGGTGCCGGGCAAGGTGACGGCCCTGGCGGGCTGA
Upstream 100 bases:
>100_bases CTGGCCCGCTCCGGCGCGGCCGGCCGGGTGGCCGACCTGTGCCAGCAGCTGGCCGGGGAATGACAGGGCGCCGAGCGAGC GTCCAAGCAGAGACACAGAC
Downstream 100 bases:
>100_bases TCGGAATTTCCGTCCGCGCCGTGGGCGCGGGCTTGTTGAGGGTAGATAGATGAAGCAGTACGGCAAGGTGGCGGTATTGA TGGGCGGAAGCTCGTCGGAG
Product: UDP-N-acetylmuramate--L-alanine ligase
Products: NA
Alternate protein names: UDP-N-acetylmuramoyl-L-alanine synthetase
Number of amino acids: Translated: 464; Mature: 464
Protein sequence:
>464_residues MKHRVKHIHFVGIGGVGMCGIAEVLHGLGYTVSGSDMADGATTKRLAAEGVRVFFGHDATYVEGADVVVTSTAVKADNPE VLAARDKRIPVIPRALMLAELMRFKQGIAIAGTHGKTTTTSLTASVLGAAGLDPTFVIGGKLTAAGTNAKLGLGEFLVAE ADESDASFLHLTPVMAVVTNIDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCVDDPNVREIRERVTKPVTTYGLDD SADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNALSAIAIGLECGASIEAIQKGLSEFAGVGRRFQRYG EVKAQDGGSFTLIDDYGHHPVEMAATLAAVRGAFPDRRLLLAFQPHRYTRTRDLFEDFVKVLSGVDALLLSEVYAAGEAP IVAADGRALARAVRVGGKVEPLFVEDIADMPQAILDAARDGDVVVTMGAGSVGAVPGKVTALAG
Sequences:
>Translated_464_residues MKHRVKHIHFVGIGGVGMCGIAEVLHGLGYTVSGSDMADGATTKRLAAEGVRVFFGHDATYVEGADVVVTSTAVKADNPE VLAARDKRIPVIPRALMLAELMRFKQGIAIAGTHGKTTTTSLTASVLGAAGLDPTFVIGGKLTAAGTNAKLGLGEFLVAE ADESDASFLHLTPVMAVVTNIDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCVDDPNVREIRERVTKPVTTYGLDD SADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNALSAIAIGLECGASIEAIQKGLSEFAGVGRRFQRYG EVKAQDGGSFTLIDDYGHHPVEMAATLAAVRGAFPDRRLLLAFQPHRYTRTRDLFEDFVKVLSGVDALLLSEVYAAGEAP IVAADGRALARAVRVGGKVEPLFVEDIADMPQAILDAARDGDVVVTMGAGSVGAVPGKVTALAG >Mature_464_residues MKHRVKHIHFVGIGGVGMCGIAEVLHGLGYTVSGSDMADGATTKRLAAEGVRVFFGHDATYVEGADVVVTSTAVKADNPE VLAARDKRIPVIPRALMLAELMRFKQGIAIAGTHGKTTTTSLTASVLGAAGLDPTFVIGGKLTAAGTNAKLGLGEFLVAE ADESDASFLHLTPVMAVVTNIDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCVDDPNVREIRERVTKPVTTYGLDD SADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNALSAIAIGLECGASIEAIQKGLSEFAGVGRRFQRYG EVKAQDGGSFTLIDDYGHHPVEMAATLAAVRGAFPDRRLLLAFQPHRYTRTRDLFEDFVKVLSGVDALLLSEVYAAGEAP IVAADGRALARAVRVGGKVEPLFVEDIADMPQAILDAARDGDVVVTMGAGSVGAVPGKVTALAG
Specific function: Cell wall formation
COG id: COG0773
COG function: function code M; UDP-N-acetylmuramate-alanine ligase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family
Homologues:
Organism=Escherichia coli, GI1786279, Length=456, Percent_Identity=52.8508771929825, Blast_Score=439, Evalue=1e-124, Organism=Escherichia coli, GI1790680, Length=469, Percent_Identity=27.9317697228145, Blast_Score=152, Evalue=3e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MURC_CHRVO (Q7NQ00)
Other databases:
- EMBL: AE016825 - RefSeq: NP_904012.1 - ProteinModelPortal: Q7NQ00 - SMR: Q7NQ00 - GeneID: 2549666 - GenomeReviews: AE016825_GR - KEGG: cvi:CV_4342 - NMPDR: fig|243365.1.peg.4342 - HOGENOM: HBG476594 - OMA: YQPHRYS - PhylomeDB: Q7NQ00 - ProtClustDB: PRK00421 - BioCyc: CVIO243365:CV_4342-MONOMER - BRENDA: 6.3.2.8 - GO: GO:0005737 - HAMAP: MF_00046 - InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR016040 - InterPro: IPR005758 - Gene3D: G3DSA:3.90.190.20 - Gene3D: G3DSA:3.40.1190.10 - Gene3D: G3DSA:3.40.50.720 - TIGRFAMs: TIGR01082
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M; SSF53244 Mur_ligase_C; SSF53623 Mur_ligase_cen
EC number: =6.3.2.8
Molecular weight: Translated: 49151; Mature: 49151
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHRVKHIHFVGIGGVGMCGIAEVLHGLGYTVSGSDMADGATTKRLAAEGVRVFFGHDAT CCCCEEEEEEEEECCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHCCEEEEECCCCC YVEGADVVVTSTAVKADNPEVLAARDKRIPVIPRALMLAELMRFKQGIAIAGTHGKTTTT EECCCCEEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHH SLTASVLGAAGLDPTFVIGGKLTAAGTNAKLGLGEFLVAEADESDASFLHLTPVMAVVTN HHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCCEEEEECCCCCCCEEEHHHHHHHHHC IDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCVDDPNVREIRERVTKPVTTYGLDD CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCEECCCCC SADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNALSAIAIGLECGASIE CCHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHH AIQKGLSEFAGVGRRFQRYGEVKAQDGGSFTLIDDYGHHPVEMAATLAAVRGAFPDRRLL HHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE LAFQPHRYTRTRDLFEDFVKVLSGVDALLLSEVYAAGEAPIVAADGRALARAVRVGGKVE EEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCC PLFVEDIADMPQAILDAARDGDVVVTMGAGSVGAVPGKVTALAG CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEECC >Mature Secondary Structure MKHRVKHIHFVGIGGVGMCGIAEVLHGLGYTVSGSDMADGATTKRLAAEGVRVFFGHDAT CCCCEEEEEEEEECCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHCCEEEEECCCCC YVEGADVVVTSTAVKADNPEVLAARDKRIPVIPRALMLAELMRFKQGIAIAGTHGKTTTT EECCCCEEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHH SLTASVLGAAGLDPTFVIGGKLTAAGTNAKLGLGEFLVAEADESDASFLHLTPVMAVVTN HHHHHHHHCCCCCCEEEECCEEEECCCCCCCCCCCEEEEECCCCCCCEEEHHHHHHHHHC IDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCVDDPNVREIRERVTKPVTTYGLDD CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCEECCCCC SADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNALSAIAIGLECGASIE CCHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHH AIQKGLSEFAGVGRRFQRYGEVKAQDGGSFTLIDDYGHHPVEMAATLAAVRGAFPDRRLL HHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE LAFQPHRYTRTRDLFEDFVKVLSGVDALLLSEVYAAGEAPIVAADGRALARAVRVGGKVE EEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCC PLFVEDIADMPQAILDAARDGDVVVTMGAGSVGAVPGKVTALAG CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14500782