Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 34499590

GI number: 34499590

Start: 4474917

End: 4476674

Strand: Direct

Name: ydaM [H]

Synonym: CV_4135

Alternate gene names: 34499590

Gene position: 4474917-4476674 (Clockwise)

Preceding gene: 34499589

Following gene: 34499592

Centisome position: 94.19

GC content: 68.94

Gene sequence:

>1758_bases
ATGGACAATACGGCCCGGCTCGAACATATAATTCACTACCACTACCAGCCAGGGCCGTTCATGATCCGCCCTTCCCCCGC
TTTATTCGGCAGCTTCCGCCTGCGGCTGGCCATCCTGTTCGGCGGACTGTTCCTCGCATCGGCGCTGCTGGCCGCGGCCT
GCCTCGACCAGGTGTTGTCGGACCGCATCGTCCGGGATCAGGGCGAGGCGATGAACAGCCTGGCCGCCAATATCGCCAAG
GCCATCGAAAGCAATCTGCGGGAACGCCACCGCGAGGTGCTGCTGCTGGCGCAAACGCCCACCTACGTCCGGGTGCCGCT
GGACGGCGACGATGTGCGCCAGAGCCTGGAGCGCACCAAGCAAGCCTACAAGTACTACGCCTGGATCGGCATCACCGACG
CCGAAGGCAAGATCGTTTCCGCCGCGGGCGGCATGCTGGTCGGCCAGAGCGCGGCCAAGCGCCCGTGGTTCATCCACGGC
CGGCACGCGCCGTTCGTCGGCGACATCCACCAGGCCGTGCTGCTGGCCAAGCTGCTGCCGAATCGCTCGCCCCAGGGCGA
ACCGCTGCGCTTCGTCGATTTCGCCTCCCCGGTATACGACCCGTCCGGCAAGCTGCGCGGCGTGCTCGCCACCCACGCGC
TGTGGGACTGGGTGGAAGACATCATACGCGAACGGCTCCCCGCCAGATCCGGACTGGAAACCTTCATCGTCGACCGGCAG
AACAACCTGCTGTCGCCGTTCGAGGCCGTGGGGCGGATGCAGGCGCCGGCGCCCATGCCTTCCGGGCAGACGTTCCGCCT
CGGCCCCTGGCCCGGCGGCGGGAACTACCTGTACAGCGAGTCCCGGGTGCGCGAGGCCGGACTGGATTGGCGCGTGGTCA
TCCGCCAGCCCAGGCAGCAGGCGCTGACGGCGCTGAACCGCCTGCGCGGCGCGCTGATGCTGCTGGGCCTGGCCGCCAGC
GCCTTGCTGATGGCGGCCGTCTACCGGCTGGCCGCCTCTTTCAGCCGGCCGCTGGAGCAACTGGCGGGCGTCGCCGAGCG
CGTGGGCCGCGGCGATGAGCAGCCCGACTGGGAAATACGCGGCGGCACGCAGGAGCTTCGCCAGCTGTCGGACGCGATGC
GAAACATGACCGCCACCCTGCTCGCCCGCGAGCGCCAGCTGGCCGACGTCAACGCCAACCTGGAGCAAATGGTCGCGGAT
CGCACCGAACAGCTGCGCGAATCCAATCGCCTGCTGGTGCAAAAGGCCGCGCAGCTGGCGCAACTGGCGCGCAACGACGC
GCTCACCGGCCTGCACAACCGCATGGCCGCCAACGAACAGCTGCAGGAAGAGCATCTGCGCCATGGCCGCAGCGGCGCGC
CGTACGCGGTACTGTTGCTGGATGTCGATCACTTCAAGCGCGTCAACGACACCCATGGCCATGACGCAGGCGACCGCGTG
CTGCGCCACATCGCCGACATCCTTCGGCGCGCGGCCCGCGCCACCGATTTCGTCGCGCGCTTCGGCGGCGAGGAATTCTT
GCTGCTGCTCCCTGAAACCGACGCCGACGGCGCCGCGGTGCTGGCGGAAAAAATCCGCGCGTCCGTCGAGCAATCCCAGG
CCCCTGACGTCGGCCGGGTCACGCTCAGCATAGGCCTGGCCACCGTCGTCCCTGCCGACTCCCAGCCGGAAATGGCGGTG
AAGCGCGCCGACCAGGCGCTGTACCGCGCCAAGGCCGCCGGCCGCAACCGGGTGGAAGCCGCGGCGCGGGAGGACTGA

Upstream 100 bases:

>100_bases
TCACCGCCGCGGTCTGCGCCACCGGCAACCAGCTGCTGAGCGGCGTCGTGCAGGCCGGCATCCAGCTTCGCAACGCGCTG
ACGGGCCGCGCCGGCTGAGA

Downstream 100 bases:

>100_bases
GCCGCCGACTTATCCACAACAGGTCTATTCAGCGAATCTTGTCCACAGCGCGGCGCTCGGCATGCGCTCACGCCGCCGGC
AGCGCGCGTTCCAGCAGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MDNTARLEHIIHYHYQPGPFMIRPSPALFGSFRLRLAILFGGLFLASALLAAACLDQVLSDRIVRDQGEAMNSLAANIAK
AIESNLRERHREVLLLAQTPTYVRVPLDGDDVRQSLERTKQAYKYYAWIGITDAEGKIVSAAGGMLVGQSAAKRPWFIHG
RHAPFVGDIHQAVLLAKLLPNRSPQGEPLRFVDFASPVYDPSGKLRGVLATHALWDWVEDIIRERLPARSGLETFIVDRQ
NNLLSPFEAVGRMQAPAPMPSGQTFRLGPWPGGGNYLYSESRVREAGLDWRVVIRQPRQQALTALNRLRGALMLLGLAAS
ALLMAAVYRLAASFSRPLEQLAGVAERVGRGDEQPDWEIRGGTQELRQLSDAMRNMTATLLARERQLADVNANLEQMVAD
RTEQLRESNRLLVQKAAQLAQLARNDALTGLHNRMAANEQLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAGDRV
LRHIADILRRAARATDFVARFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQAPDVGRVTLSIGLATVVPADSQPEMAV
KRADQALYRAKAAGRNRVEAAARED

Sequences:

>Translated_585_residues
MDNTARLEHIIHYHYQPGPFMIRPSPALFGSFRLRLAILFGGLFLASALLAAACLDQVLSDRIVRDQGEAMNSLAANIAK
AIESNLRERHREVLLLAQTPTYVRVPLDGDDVRQSLERTKQAYKYYAWIGITDAEGKIVSAAGGMLVGQSAAKRPWFIHG
RHAPFVGDIHQAVLLAKLLPNRSPQGEPLRFVDFASPVYDPSGKLRGVLATHALWDWVEDIIRERLPARSGLETFIVDRQ
NNLLSPFEAVGRMQAPAPMPSGQTFRLGPWPGGGNYLYSESRVREAGLDWRVVIRQPRQQALTALNRLRGALMLLGLAAS
ALLMAAVYRLAASFSRPLEQLAGVAERVGRGDEQPDWEIRGGTQELRQLSDAMRNMTATLLARERQLADVNANLEQMVAD
RTEQLRESNRLLVQKAAQLAQLARNDALTGLHNRMAANEQLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAGDRV
LRHIADILRRAARATDFVARFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQAPDVGRVTLSIGLATVVPADSQPEMAV
KRADQALYRAKAAGRNRVEAAARED
>Mature_585_residues
MDNTARLEHIIHYHYQPGPFMIRPSPALFGSFRLRLAILFGGLFLASALLAAACLDQVLSDRIVRDQGEAMNSLAANIAK
AIESNLRERHREVLLLAQTPTYVRVPLDGDDVRQSLERTKQAYKYYAWIGITDAEGKIVSAAGGMLVGQSAAKRPWFIHG
RHAPFVGDIHQAVLLAKLLPNRSPQGEPLRFVDFASPVYDPSGKLRGVLATHALWDWVEDIIRERLPARSGLETFIVDRQ
NNLLSPFEAVGRMQAPAPMPSGQTFRLGPWPGGGNYLYSESRVREAGLDWRVVIRQPRQQALTALNRLRGALMLLGLAAS
ALLMAAVYRLAASFSRPLEQLAGVAERVGRGDEQPDWEIRGGTQELRQLSDAMRNMTATLLARERQLADVNANLEQMVAD
RTEQLRESNRLLVQKAAQLAQLARNDALTGLHNRMAANEQLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAGDRV
LRHIADILRRAARATDFVARFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQAPDVGRVTLSIGLATVVPADSQPEMAV
KRADQALYRAKAAGRNRVEAAARED

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=44.3243243243243, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=38.6503067484663, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=35.2601156069364, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=38.9937106918239, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=37.4301675977654, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=36.9047619047619, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=34.5238095238095, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=34.7560975609756, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=36.1963190184049, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=30.718954248366, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=30.7262569832402, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=31.6666666666667, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1788956, Length=190, Percent_Identity=32.1052631578947, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 64620; Mature: 64620

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNTARLEHIIHYHYQPGPFMIRPSPALFGSFRLRLAILFGGLFLASALLAAACLDQVLS
CCCHHHHHHHHHHEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRIVRDQGEAMNSLAANIAKAIESNLRERHREVLLLAQTPTYVRVPLDGDDVRQSLERTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCHHHHHHHHHHHH
QAYKYYAWIGITDAEGKIVSAAGGMLVGQSAAKRPWFIHGRHAPFVGDIHQAVLLAKLLP
HHHEEEEEEEEECCCCCEEECCCCEEECCHHCCCCCEEECCCCCCHHHHHHHHHHHHHHC
NRSPQGEPLRFVDFASPVYDPSGKLRGVLATHALWDWVEDIIRERLPARSGLETFIVDRQ
CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
NNLLSPFEAVGRMQAPAPMPSGQTFRLGPWPGGGNYLYSESRVREAGLDWRVVIRQPRQQ
CCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEECCHHHHHHCCCCEEEEHHCCHHH
ALTALNRLRGALMLLGLAASALLMAAVYRLAASFSRPLEQLAGVAERVGRGDEQPDWEIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEC
GGTQELRQLSDAMRNMTATLLARERQLADVNANLEQMVADRTEQLRESNRLLVQKAAQLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLARNDALTGLHNRMAANEQLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAGDRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHH
LRHIADILRRAARATDFVARFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQAPDVGRV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEE
TLSIGLATVVPADSQPEMAVKRADQALYRAKAAGRNRVEAAARED
EEEECHHEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure
MDNTARLEHIIHYHYQPGPFMIRPSPALFGSFRLRLAILFGGLFLASALLAAACLDQVLS
CCCHHHHHHHHHHEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRIVRDQGEAMNSLAANIAKAIESNLRERHREVLLLAQTPTYVRVPLDGDDVRQSLERTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCHHHHHHHHHHHH
QAYKYYAWIGITDAEGKIVSAAGGMLVGQSAAKRPWFIHGRHAPFVGDIHQAVLLAKLLP
HHHEEEEEEEEECCCCCEEECCCCEEECCHHCCCCCEEECCCCCCHHHHHHHHHHHHHHC
NRSPQGEPLRFVDFASPVYDPSGKLRGVLATHALWDWVEDIIRERLPARSGLETFIVDRQ
CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
NNLLSPFEAVGRMQAPAPMPSGQTFRLGPWPGGGNYLYSESRVREAGLDWRVVIRQPRQQ
CCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEECCHHHHHHCCCCEEEEHHCCHHH
ALTALNRLRGALMLLGLAASALLMAAVYRLAASFSRPLEQLAGVAERVGRGDEQPDWEIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEC
GGTQELRQLSDAMRNMTATLLARERQLADVNANLEQMVADRTEQLRESNRLLVQKAAQLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLARNDALTGLHNRMAANEQLQEEHLRHGRSGAPYAVLLLDVDHFKRVNDTHGHDAGDRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCCCCCCCCHHHHH
LRHIADILRRAARATDFVARFGGEEFLLLLPETDADGAAVLAEKIRASVEQSQAPDVGRV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEE
TLSIGLATVVPADSQPEMAVKRADQALYRAKAAGRNRVEAAARED
EEEECHHEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]