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The map label for this gene is degT [H]

Identifier: 34499579

GI number: 34499579

Start: 4465046

End: 4466143

Strand: Reverse

Name: degT [H]

Synonym: CV_4124

Alternate gene names: 34499579

Gene position: 4466143-4465046 (Counterclockwise)

Preceding gene: 34499580

Following gene: 34499578

Centisome position: 94.0

GC content: 67.49

Gene sequence:

>1098_bases
ATGTCCATCCAGTTCATCGATCTGAAAGCGCAATACCAGCATCTGAAAGCCGACATCGACGCCCGCATCCACGCGGTGCT
GGACCACGGCCAGTACATCATGGGGCCGGAAGTGAAGGAGGTGGAGGAACAGCTGGCGGCCTACACCGGCGCCAAGCACG
CCATCGGCGTTTGCGATGGCACCAAGGCGCTGCTGATCGCGATGATGGCGCTGGGCATCGGCCCCGGCGACGAGGTGATC
ACCACCCCGTTCACCTTCATCGCCACCGGCGAGATGATCGCCCTCCTGGGCGCCAAGCCGGTGTTCGTCGACATCGACCC
CGTCAGCTACAACCTGGACCCGAACCGGCTGGAAGCGGCGATCACGGCCAGGACCCGCGCCATCATGCCGGTCAGCCTGT
ACGGCCAGGCGGCGGATTTCACCGCGATCAACGCCATCGCCGACAAGCACGGCATCCCGGTGATCGAGGACGGCGCGCAA
AGCTTCGGCGCCAGCCAGCACGGCAAGAAATCCGGCAACCTGTCCACCATCGGCTGCACCAGCTTCTTCCCCAGCAAGCC
GCTGGGTTGCTACGGCGACGGCGGCGCGGTGTTCACCAGCGACGACGCGCTGGCCAAGAAGATCCGCGAGATCCGCGTCC
ACGGCCAGGACCGCCGCTACCATCACCCGATCATCGGCCTGAACGGCCGCCTGGACACCATCCAGGCCGCGGTGCTGCTG
GCCAAGCTGCCCAGCTTCGCCGACGAAGTGGCCGCCCGCGAGCGCATCGGCGCGCGCTACAGCGCGTTGCTGAAGGATGT
GGCGCGCGTGCCGGTGATCGGCGCGGGCAACACCCACGTCTACGCGCAGTACACCATCGAGGTGGACGAGCGCGAGGCGG
TGCAGGCCAGGTTGAAAGAGCTGGGCGTGCCCACCGCCGTCCATTACCCGATCCCGCTGCACCTGCAGCCGGCCTTCGCC
CACCTGGGCCAGGGCGAGGGCAGCTTCCCGCTGTCCGAGGCCGCCGGCAAGCGCGTGATGAGCCTGCCGATGCATCCCTT
CCTGACGGAAGACGCGCAGGACGCCATCGTCGCCGCGGTGAAGAAGGCGCTGGGCTGA

Upstream 100 bases:

>100_bases
GTCTCAGGCGCGCAGGCCGGCCGCGCGATCGGCGCGGCCGGCGCCGGGACGCTTGTTCAGCGTGCATTTTTCAAAATACT
GATTTGGGGTTGAGCCTCTT

Downstream 100 bases:

>100_bases
GAGGATGGTGTCGTTGTCGTCGCTGCGCGTGCCCAAAAGCGGTTTCATCCGCCACATCATCACCCTGGTGACCGGGGCGG
CGGTGGCCCAGGTGGTGCCG

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MSIQFIDLKAQYQHLKADIDARIHAVLDHGQYIMGPEVKEVEEQLAAYTGAKHAIGVCDGTKALLIAMMALGIGPGDEVI
TTPFTFIATGEMIALLGAKPVFVDIDPVSYNLDPNRLEAAITARTRAIMPVSLYGQAADFTAINAIADKHGIPVIEDGAQ
SFGASQHGKKSGNLSTIGCTSFFPSKPLGCYGDGGAVFTSDDALAKKIREIRVHGQDRRYHHPIIGLNGRLDTIQAAVLL
AKLPSFADEVAARERIGARYSALLKDVARVPVIGAGNTHVYAQYTIEVDEREAVQARLKELGVPTAVHYPIPLHLQPAFA
HLGQGEGSFPLSEAAGKRVMSLPMHPFLTEDAQDAIVAAVKKALG

Sequences:

>Translated_365_residues
MSIQFIDLKAQYQHLKADIDARIHAVLDHGQYIMGPEVKEVEEQLAAYTGAKHAIGVCDGTKALLIAMMALGIGPGDEVI
TTPFTFIATGEMIALLGAKPVFVDIDPVSYNLDPNRLEAAITARTRAIMPVSLYGQAADFTAINAIADKHGIPVIEDGAQ
SFGASQHGKKSGNLSTIGCTSFFPSKPLGCYGDGGAVFTSDDALAKKIREIRVHGQDRRYHHPIIGLNGRLDTIQAAVLL
AKLPSFADEVAARERIGARYSALLKDVARVPVIGAGNTHVYAQYTIEVDEREAVQARLKELGVPTAVHYPIPLHLQPAFA
HLGQGEGSFPLSEAAGKRVMSLPMHPFLTEDAQDAIVAAVKKALG
>Mature_364_residues
SIQFIDLKAQYQHLKADIDARIHAVLDHGQYIMGPEVKEVEEQLAAYTGAKHAIGVCDGTKALLIAMMALGIGPGDEVIT
TPFTFIATGEMIALLGAKPVFVDIDPVSYNLDPNRLEAAITARTRAIMPVSLYGQAADFTAINAIADKHGIPVIEDGAQS
FGASQHGKKSGNLSTIGCTSFFPSKPLGCYGDGGAVFTSDDALAKKIREIRVHGQDRRYHHPIIGLNGRLDTIQAAVLLA
KLPSFADEVAARERIGARYSALLKDVARVPVIGAGNTHVYAQYTIEVDEREAVQARLKELGVPTAVHYPIPLHLQPAFAH
LGQGEGSFPLSEAAGKRVMSLPMHPFLTEDAQDAIVAAVKKALG

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=368, Percent_Identity=33.4239130434783, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI2367285, Length=366, Percent_Identity=31.6939890710383, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 39017; Mature: 38886

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQFIDLKAQYQHLKADIDARIHAVLDHGQYIMGPEVKEVEEQLAAYTGAKHAIGVCDG
CCEEEEEHHHHHHHHHHHHHHHEEEEHHCCCEEECCCHHHHHHHHHHHCCCCCEEEECCC
TKALLIAMMALGIGPGDEVITTPFTFIATGEMIALLGAKPVFVDIDPVSYNLDPNRLEAA
HHHHHHHHHHHCCCCCCCEEECCEEEEECCCEEEEECCCEEEEEECCEEECCCHHHHHHH
ITARTRAIMPVSLYGQAADFTAINAIADKHGIPVIEDGAQSFGASQHGKKSGNLSTIGCT
HHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCCCCEEEEEEC
SFFPSKPLGCYGDGGAVFTSDDALAKKIREIRVHGQDRRYHHPIIGLNGRLDTIQAAVLL
CCCCCCCCCEECCCCEEEECCHHHHHHHHHHHCCCCCCCEECCEEECCCCHHHHHHHHHH
AKLPSFADEVAARERIGARYSALLKDVARVPVIGAGNTHVYAQYTIEVDEREAVQARLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEEEEEECHHHHHHHHHHH
LGVPTAVHYPIPLHLQPAFAHLGQGEGSFPLSEAAGKRVMSLPMHPFLTEDAQDAIVAAV
CCCCEEEECCCCEEECHHHHHCCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHHHHH
KKALG
HHHCC
>Mature Secondary Structure 
SIQFIDLKAQYQHLKADIDARIHAVLDHGQYIMGPEVKEVEEQLAAYTGAKHAIGVCDG
CEEEEEHHHHHHHHHHHHHHHEEEEHHCCCEEECCCHHHHHHHHHHHCCCCCEEEECCC
TKALLIAMMALGIGPGDEVITTPFTFIATGEMIALLGAKPVFVDIDPVSYNLDPNRLEAA
HHHHHHHHHHHCCCCCCCEEECCEEEEECCCEEEEECCCEEEEEECCEEECCCHHHHHHH
ITARTRAIMPVSLYGQAADFTAINAIADKHGIPVIEDGAQSFGASQHGKKSGNLSTIGCT
HHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCCCCEEEEEEC
SFFPSKPLGCYGDGGAVFTSDDALAKKIREIRVHGQDRRYHHPIIGLNGRLDTIQAAVLL
CCCCCCCCCEECCCCEEEECCHHHHHHHHHHHCCCCCCCEECCEEECCCCHHHHHHHHHH
AKLPSFADEVAARERIGARYSALLKDVARVPVIGAGNTHVYAQYTIEVDEREAVQARLKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEEEEEEEEECHHHHHHHHHHH
LGVPTAVHYPIPLHLQPAFAHLGQGEGSFPLSEAAGKRVMSLPMHPFLTEDAQDAIVAAV
CCCCEEEECCCCEEECHHHHHCCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHHHHH
KKALG
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]