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The map label for this gene is capD [H]

Identifier: 34499570

GI number: 34499570

Start: 4455280

End: 4457160

Strand: Reverse

Name: capD [H]

Synonym: CV_4115

Alternate gene names: 34499570

Gene position: 4457160-4455280 (Counterclockwise)

Preceding gene: 34499571

Following gene: 34499568

Centisome position: 93.81

GC content: 66.99

Gene sequence:

>1881_bases
ATGTTTGAAAAACTGCTAGCCTTCTCCCGCCACAACAAGATGGCGATGCTGGCGCTGATGGATGCGCTGCTGCTGCCGCT
GGCCTTGTGGAGCGCGGTATTCCTGCGCCTGGGCGGCTATTGGGACCCGAAGCTCAACCCGCACCTGTGGATCTTCATCG
TGCCGCCCTTGTGGGCGATTCCCATCTTCATCAAGCTGGGCCTGTACCGCGCGGTGCTGAAATACCTGGACGACAAGATC
ATCTTCACTGTGTTCAGCGGCGTGACGCTGTCGGTGCTGGTGTTGCAGGCGGTGATACAGATGGCCCACATCTGGGCGAT
GCCGCGCGCGTCGGTGATCATCTTCTGGGTGTTCGCGATGGCCTACATCGGCGGCAGCCGCTTCCTGCTGCGCGGCCTGG
TGCGGCGCATCGACGCCACCGAAGCGCCGCGCGATCCGGTGATCATCTACGGCGCCGGCCAGGCCGGCGTGCAACTGATG
CTGGCCCTGCAGGCCGGCCGCGAGTACCGGCCGATGGCCTTCGTCGACGACAATCCGGACCTGCGCCGCCGCACTTACCG
CGGCGTGGCGGTGCACGCGCCGGAGGAGCTGCCGGCGCTGATCAAGGATACCCAGGCCAAGTGCATCCTGCTGGCGATGC
CGTCTGTGGGACGAGGCCGCCAGCGCGAGATATTGGAGTCGCTGGAAAAGCTCAGGGTGCCGATCAAGCGCCTGCCCGGC
ATGGCCGACCTGGTGTCCGGCGAGGCGCGGGTGGAGGAGTTGAAGGAAGTCGAGATCGAGGACCTGCTGGGTCGCGAGCC
GGTGCCGCCCAAGACCGAGCTGCTGGCGCGCAATATCCGCGACAAGGTGGTGATGGTCACCGGGGCCGGCGGCTCCATCG
GTTCCGAGCTGGCGCGGCAGATCGTCCGCAACCGTCCGGCGCGCATCGTGCTGTTCGAATTGTCGGAGTTCGCGCTGTAC
AGCATAGACCAGGAGCTGGCGCAGATCGCGCCCAGGATTCCGCGCACGCCCATCCTGGGCTCGGTGACCGACTACGCCCG
CCTGACTCAGGTGATGCGCGCCTTCCAGGTGGAAACGGTGTACCACGCCGCCGCCTACAAGCACGTGCCGATGGTGGAGC
ACAACCCGGTGGCCGGCATCGTCAACAACGCCTTCGGCACCGATACCACGGCAAGAGCCGCCGAGGATTGCGGCGTCGAC
ACCTTCGTGCTGATCTCCACCGACAAGGCCGTGCGCCCCACCAACGTGATGGGCGCCACCAAGCGGCTGGCCGAACTGAC
CCTGCAGACCCGCCACGCGCGCGGCAGCCGCACCCGCTTCGTGATGGTGCGCTTCGGCAACGTGCTGGGCAGCTCCGGCT
CCGTGGTGCCGCTGTTCCGTCGGCAGATCAAGGCCGGCGGCCCGATCACGCTGACCCACGCCGACATCACCCGCTACTTC
ATGACGATACCGGAGGCGGCGCAGCTGGTGATCCAGGCCGGCGCGATGGGCGACGGCGGCGACGTGTTCGTGCTGGACAT
GGGCGAGCCGGTGAAGATCATCGAATTGGCGCGGCGCATGGTGCACCTGTCCGGGCTGGAGGTGAAGGACGAGAACCAGC
CGGGCGGCGACATCGAGATCCGCGTCACCGGCCTGCGTCCGGGCGAGAAGCTGTACGAGGAGCTGCTGATCGGCGACAAC
GTGTTGCCGACCGACCACGCCCGCATCATGCGCGCGCAGGAATACCATTTGACCGAAGAGGAAATGGCGTCGCTGCTGGC
GCGCCTGGCCGATGCCTGCCAGCGGCTGGACGCGCCGACGGCATTCGCGCTGATGCAGGAGGCGGTGCACGAGTTCCAGG
CCGCCGAGGCCACCCAGGACTGGGTGGCGCTGCAGGGCTGA

Upstream 100 bases:

>100_bases
CGCAGGGTTTTGAACTGCTGAGCCTGGGCGATGGCCAGGATAACGAGGAAAGCTGTCCGGACGCGCTGTATCAATGGCGG
CCGGATACGAAAGAATGACC

Downstream 100 bases:

>100_bases
GTCCGCGCATTCCCGCTTTTAGCGACGGCTGCAGGCTACCATTTGCAGCCGTTGTCTTTATCGAAGGCGTCTTTCAGCAG
CATCGGCGCGGCCAACAGGC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 626; Mature: 626

Protein sequence:

>626_residues
MFEKLLAFSRHNKMAMLALMDALLLPLALWSAVFLRLGGYWDPKLNPHLWIFIVPPLWAIPIFIKLGLYRAVLKYLDDKI
IFTVFSGVTLSVLVLQAVIQMAHIWAMPRASVIIFWVFAMAYIGGSRFLLRGLVRRIDATEAPRDPVIIYGAGQAGVQLM
LALQAGREYRPMAFVDDNPDLRRRTYRGVAVHAPEELPALIKDTQAKCILLAMPSVGRGRQREILESLEKLRVPIKRLPG
MADLVSGEARVEELKEVEIEDLLGREPVPPKTELLARNIRDKVVMVTGAGGSIGSELARQIVRNRPARIVLFELSEFALY
SIDQELAQIAPRIPRTPILGSVTDYARLTQVMRAFQVETVYHAAAYKHVPMVEHNPVAGIVNNAFGTDTTARAAEDCGVD
TFVLISTDKAVRPTNVMGATKRLAELTLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFRRQIKAGGPITLTHADITRYF
MTIPEAAQLVIQAGAMGDGGDVFVLDMGEPVKIIELARRMVHLSGLEVKDENQPGGDIEIRVTGLRPGEKLYEELLIGDN
VLPTDHARIMRAQEYHLTEEEMASLLARLADACQRLDAPTAFALMQEAVHEFQAAEATQDWVALQG

Sequences:

>Translated_626_residues
MFEKLLAFSRHNKMAMLALMDALLLPLALWSAVFLRLGGYWDPKLNPHLWIFIVPPLWAIPIFIKLGLYRAVLKYLDDKI
IFTVFSGVTLSVLVLQAVIQMAHIWAMPRASVIIFWVFAMAYIGGSRFLLRGLVRRIDATEAPRDPVIIYGAGQAGVQLM
LALQAGREYRPMAFVDDNPDLRRRTYRGVAVHAPEELPALIKDTQAKCILLAMPSVGRGRQREILESLEKLRVPIKRLPG
MADLVSGEARVEELKEVEIEDLLGREPVPPKTELLARNIRDKVVMVTGAGGSIGSELARQIVRNRPARIVLFELSEFALY
SIDQELAQIAPRIPRTPILGSVTDYARLTQVMRAFQVETVYHAAAYKHVPMVEHNPVAGIVNNAFGTDTTARAAEDCGVD
TFVLISTDKAVRPTNVMGATKRLAELTLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFRRQIKAGGPITLTHADITRYF
MTIPEAAQLVIQAGAMGDGGDVFVLDMGEPVKIIELARRMVHLSGLEVKDENQPGGDIEIRVTGLRPGEKLYEELLIGDN
VLPTDHARIMRAQEYHLTEEEMASLLARLADACQRLDAPTAFALMQEAVHEFQAAEATQDWVALQG
>Mature_626_residues
MFEKLLAFSRHNKMAMLALMDALLLPLALWSAVFLRLGGYWDPKLNPHLWIFIVPPLWAIPIFIKLGLYRAVLKYLDDKI
IFTVFSGVTLSVLVLQAVIQMAHIWAMPRASVIIFWVFAMAYIGGSRFLLRGLVRRIDATEAPRDPVIIYGAGQAGVQLM
LALQAGREYRPMAFVDDNPDLRRRTYRGVAVHAPEELPALIKDTQAKCILLAMPSVGRGRQREILESLEKLRVPIKRLPG
MADLVSGEARVEELKEVEIEDLLGREPVPPKTELLARNIRDKVVMVTGAGGSIGSELARQIVRNRPARIVLFELSEFALY
SIDQELAQIAPRIPRTPILGSVTDYARLTQVMRAFQVETVYHAAAYKHVPMVEHNPVAGIVNNAFGTDTTARAAEDCGVD
TFVLISTDKAVRPTNVMGATKRLAELTLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFRRQIKAGGPITLTHADITRYF
MTIPEAAQLVIQAGAMGDGGDVFVLDMGEPVKIIELARRMVHLSGLEVKDENQPGGDIEIRVTGLRPGEKLYEELLIGDN
VLPTDHARIMRAQEYHLTEEEMASLLARLADACQRLDAPTAFALMQEAVHEFQAAEATQDWVALQG

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 69467; Mature: 69467

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKLLAFSRHNKMAMLALMDALLLPLALWSAVFLRLGGYWDPKLNPHLWIFIVPPLWAI
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHH
PIFIKLGLYRAVLKYLDDKIIFTVFSGVTLSVLVLQAVIQMAHIWAMPRASVIIFWVFAM
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AYIGGSRFLLRGLVRRIDATEAPRDPVIIYGAGQAGVQLMLALQAGREYRPMAFVDDNPD
HHHCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCH
LRRRTYRGVAVHAPEELPALIKDTQAKCILLAMPSVGRGRQREILESLEKLRVPIKRLPG
HHHHHHCCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHCCC
MADLVSGEARVEELKEVEIEDLLGREPVPPKTELLARNIRDKVVMVTGAGGSIGSELARQ
HHHHHCCHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
IVRNRPARIVLFELSEFALYSIDQELAQIAPRIPRTPILGSVTDYARLTQVMRAFQVETV
HHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YHAAAYKHVPMVEHNPVAGIVNNAFGTDTTARAAEDCGVDTFVLISTDKAVRPTNVMGAT
HHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
KRLAELTLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFRRQIKAGGPITLTHADITRYF
HHHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCCCHHHHHHHHCCCCCEEEEHHHHHHHH
MTIPEAAQLVIQAGAMGDGGDVFVLDMGEPVKIIELARRMVHLSGLEVKDENQPGGDIEI
HHCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEE
RVTGLRPGEKLYEELLIGDNVLPTDHARIMRAQEYHLTEEEMASLLARLADACQRLDAPT
EEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCH
AFALMQEAVHEFQAAEATQDWVALQG
HHHHHHHHHHHHHHHHCCCCCEEECC
>Mature Secondary Structure
MFEKLLAFSRHNKMAMLALMDALLLPLALWSAVFLRLGGYWDPKLNPHLWIFIVPPLWAI
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHH
PIFIKLGLYRAVLKYLDDKIIFTVFSGVTLSVLVLQAVIQMAHIWAMPRASVIIFWVFAM
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AYIGGSRFLLRGLVRRIDATEAPRDPVIIYGAGQAGVQLMLALQAGREYRPMAFVDDNPD
HHHCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCH
LRRRTYRGVAVHAPEELPALIKDTQAKCILLAMPSVGRGRQREILESLEKLRVPIKRLPG
HHHHHHCCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHCCC
MADLVSGEARVEELKEVEIEDLLGREPVPPKTELLARNIRDKVVMVTGAGGSIGSELARQ
HHHHHCCHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
IVRNRPARIVLFELSEFALYSIDQELAQIAPRIPRTPILGSVTDYARLTQVMRAFQVETV
HHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YHAAAYKHVPMVEHNPVAGIVNNAFGTDTTARAAEDCGVDTFVLISTDKAVRPTNVMGAT
HHHHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
KRLAELTLQTRHARGSRTRFVMVRFGNVLGSSGSVVPLFRRQIKAGGPITLTHADITRYF
HHHHHHHHHHHHCCCCCCEEEEEEECHHHCCCCCCHHHHHHHHCCCCCEEEEHHHHHHHH
MTIPEAAQLVIQAGAMGDGGDVFVLDMGEPVKIIELARRMVHLSGLEVKDENQPGGDIEI
HHCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEEE
RVTGLRPGEKLYEELLIGDNVLPTDHARIMRAQEYHLTEEEMASLLARLADACQRLDAPT
EEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCH
AFALMQEAVHEFQAAEATQDWVALQG
HHHHHHHHHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]