| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499562
Identifier: 34499562
GI number: 34499562
Start: 4448245
End: 4449987
Strand: Reverse
Name: 34499562
Synonym: CV_4107
Alternate gene names: NA
Gene position: 4449987-4448245 (Counterclockwise)
Preceding gene: 34499564
Following gene: 34499561
Centisome position: 93.66
GC content: 67.64
Gene sequence:
>1743_bases ATGAAAGAGATCAAAAAGACAGTTCTGGCTTCCGTGATATTGAGCGCGATGATGACCGCATGCGGCGGGGGCGGCAGCTC CTCCGCGGATGGAGGATCGGGCAACGCTCCGTCTGTAGCCTTTTATCAACGCAGCGCCGGCGGCGTCGAAGTCGGCACGC TGGATTGCTCGGGCGCCAGCTGCAAGGTGCCGGCCAGCGCAAGCGGCGCGGCATCGGGCTCGGTCTATCGTTACAGCAAC ACCACTGGACGCGATCAGACGCTGCAGTTGACTGGCCCGGTGACGTCCGCCTGGCAGGCGGAGTTCGTGCGCATCAGCGG CGGCGACACTTCCACCCAGTTCAAGCAGTCGGGATCGGGCCTGCGCGGCGCCGGCCGCGAAGTGGCGGACCGGTTGGAAG CCGAAAGCCAAGCGGTGCTGAACGCGGTGGCGAAGAACAGCAGCAACGGCGCGCTGCAGCGCTTGCAGCTGCAGCACTCG GCCAAGCTGAGCGGCGCCCAGGCGGCATTGCAGCAACAGGCCTACGCGCTGGGCGACGCGCGCACCTGGCACGACATGGA CGGCGACAGCCCCACCACCTTGAAGGCGGTGCGCGACCTGCCCAACGGCGGCGGCAAAGTTTATGTCTGGGGCCAGAGCG GGCTGGACGTGGGCGTCGACAACGCCCAGGCCGACGCGCTGGCCGAACGCTTCGCCGGCAGCGTCTATCCGCTGGAGGCG AGCGTGGTCAGCGAGCCCTGGGGCAACGACATCCATCCGAGCTGGCGCAGCCTGGCCCTGCCTGGCAGCACCAAGGACGT GCACCTGGTGCTGAGCCGGCTCAACGATCCGGCCAAGACCAGCGGCGGCCGCTTGCTCGGCTACGTGCGCTGGACCAACG CGCTGCTGGCTTCGGCCGCTTCCAGCATGTGCCAGGGCGATGCCGAGTGCGCCGACGTGATCGGCAAAAGCAACGAGGCG CTGGTAACCTTCATCGATCTGGACACCTTCGCCAAGGCCGATAGCCCGGGCAACTGGTCGATGAAGGACAACGGCCCCAG CCTGGCGCTGTCGACGATGGCGCACGAGTACCTGCACGTGCTGTACGCTTACAACAAGATCCTGCGCCAGAAGCCGGGCT CCGCACCGACCACGGTGTGGGAGAACGAACTGGCGGCGCAGACCATGGGCTACCTGGTGTCGGCCGACACCTACACCGGC GGCCGCGGCCGCGACGCCAATTCGCACCCGGACCTGCGCCCGCGCGGGGACTTCGAGCAGTTCCTGGCCAAGCCGGCATG CAATCTGAAGGGCTGGAGCGTCGCCGCCGACGACTACACGTGCTATCCGAAGGCGCTGGCGCTGGGCATGCAGATGCTGC ACCAGTTCGGCCCCGGCGTGATGAAGCCGTGGGTGACCGGCCCGAGCAAGGGAGAGAGCGCTTTGAACGACGGTTTGCGC GCGGTGGGCGCCGGCGATTACGGCAGTCTGCTGCAGCGGCTGACCACCACGCTGGCCCTGGGCAGCTACAGCCAGGAAGT GGCCGGCTTCGGCTTCCCGGCCAAGACCATCACGCTGCCTGCCAACCAGTACTTCCCGGCGGGCAAGATCCTGCAACTGC CGGCGGTGCGCTTCCAGGCGTCCGAGGTGGGTTGGCGCAACGACAGCAGCCAGGAGACCTGGCGCCAGCCGCTGGCCGTG TCGCGCGGCGCGGCTCGGATCACCGTGCCGGCCAATAGCCATCTGCTGCTGGTGAAACCGTGA
Upstream 100 bases:
>100_bases CCGACGATTAATTGTAATAAATTGACATTGTGCTCATTTATGTCGTGTGGCTAATATCATCATTCTGTTTAGAAATTAAC CACAAAAAGACGACAAAGTG
Downstream 100 bases:
>100_bases TGCGGCGCGCGCTGTGGCTGCTCGCCCTGACGCCTTCGCTGCTGGCGATGGCTGCGCAGCCCTGGGAAAAGGGCGTGCTG GTGGAGGTGGGCGCCTATCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MKEIKKTVLASVILSAMMTACGGGGSSSADGGSGNAPSVAFYQRSAGGVEVGTLDCSGASCKVPASASGAASGSVYRYSN TTGRDQTLQLTGPVTSAWQAEFVRISGGDTSTQFKQSGSGLRGAGREVADRLEAESQAVLNAVAKNSSNGALQRLQLQHS AKLSGAQAALQQQAYALGDARTWHDMDGDSPTTLKAVRDLPNGGGKVYVWGQSGLDVGVDNAQADALAERFAGSVYPLEA SVVSEPWGNDIHPSWRSLALPGSTKDVHLVLSRLNDPAKTSGGRLLGYVRWTNALLASAASSMCQGDAECADVIGKSNEA LVTFIDLDTFAKADSPGNWSMKDNGPSLALSTMAHEYLHVLYAYNKILRQKPGSAPTTVWENELAAQTMGYLVSADTYTG GRGRDANSHPDLRPRGDFEQFLAKPACNLKGWSVAADDYTCYPKALALGMQMLHQFGPGVMKPWVTGPSKGESALNDGLR AVGAGDYGSLLQRLTTTLALGSYSQEVAGFGFPAKTITLPANQYFPAGKILQLPAVRFQASEVGWRNDSSQETWRQPLAV SRGAARITVPANSHLLLVKP
Sequences:
>Translated_580_residues MKEIKKTVLASVILSAMMTACGGGGSSSADGGSGNAPSVAFYQRSAGGVEVGTLDCSGASCKVPASASGAASGSVYRYSN TTGRDQTLQLTGPVTSAWQAEFVRISGGDTSTQFKQSGSGLRGAGREVADRLEAESQAVLNAVAKNSSNGALQRLQLQHS AKLSGAQAALQQQAYALGDARTWHDMDGDSPTTLKAVRDLPNGGGKVYVWGQSGLDVGVDNAQADALAERFAGSVYPLEA SVVSEPWGNDIHPSWRSLALPGSTKDVHLVLSRLNDPAKTSGGRLLGYVRWTNALLASAASSMCQGDAECADVIGKSNEA LVTFIDLDTFAKADSPGNWSMKDNGPSLALSTMAHEYLHVLYAYNKILRQKPGSAPTTVWENELAAQTMGYLVSADTYTG GRGRDANSHPDLRPRGDFEQFLAKPACNLKGWSVAADDYTCYPKALALGMQMLHQFGPGVMKPWVTGPSKGESALNDGLR AVGAGDYGSLLQRLTTTLALGSYSQEVAGFGFPAKTITLPANQYFPAGKILQLPAVRFQASEVGWRNDSSQETWRQPLAV SRGAARITVPANSHLLLVKP >Mature_580_residues MKEIKKTVLASVILSAMMTACGGGGSSSADGGSGNAPSVAFYQRSAGGVEVGTLDCSGASCKVPASASGAASGSVYRYSN TTGRDQTLQLTGPVTSAWQAEFVRISGGDTSTQFKQSGSGLRGAGREVADRLEAESQAVLNAVAKNSSNGALQRLQLQHS AKLSGAQAALQQQAYALGDARTWHDMDGDSPTTLKAVRDLPNGGGKVYVWGQSGLDVGVDNAQADALAERFAGSVYPLEA SVVSEPWGNDIHPSWRSLALPGSTKDVHLVLSRLNDPAKTSGGRLLGYVRWTNALLASAASSMCQGDAECADVIGKSNEA LVTFIDLDTFAKADSPGNWSMKDNGPSLALSTMAHEYLHVLYAYNKILRQKPGSAPTTVWENELAAQTMGYLVSADTYTG GRGRDANSHPDLRPRGDFEQFLAKPACNLKGWSVAADDYTCYPKALALGMQMLHQFGPGVMKPWVTGPSKGESALNDGLR AVGAGDYGSLLQRLTTTLALGSYSQEVAGFGFPAKTITLPANQYFPAGKILQLPAVRFQASEVGWRNDSSQETWRQPLAV SRGAARITVPANSHLLLVKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60988; Mature: 60988
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEIKKTVLASVILSAMMTACGGGGSSSADGGSGNAPSVAFYQRSAGGVEVGTLDCSGAS CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCC CKVPASASGAASGSVYRYSNTTGRDQTLQLTGPVTSAWQAEFVRISGGDTSTQFKQSGSG EECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHCCCC LRGAGREVADRLEAESQAVLNAVAKNSSNGALQRLQLQHSAKLSGAQAALQQQAYALGDA CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC RTWHDMDGDSPTTLKAVRDLPNGGGKVYVWGQSGLDVGVDNAQADALAERFAGSVYPLEA CCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEH SVVSEPWGNDIHPSWRSLALPGSTKDVHLVLSRLNDPAKTSGGRLLGYVRWTNALLASAA HHHCCCCCCCCCCCHHEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHH SSMCQGDAECADVIGKSNEALVTFIDLDTFAKADSPGNWSMKDNGPSLALSTMAHEYLHV HHHHCCCHHHHHHHCCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LYAYNKILRQKPGSAPTTVWENELAAQTMGYLVSADTYTGGRGRDANSHPDLRPRGDFEQ HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCHHH FLAKPACNLKGWSVAADDYTCYPKALALGMQMLHQFGPGVMKPWVTGPSKGESALNDGLR HHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHH AVGAGDYGSLLQRLTTTLALGSYSQEVAGFGFPAKTITLPANQYFPAGKILQLPAVRFQA CCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCCCCCCCEEECCCCEEEH SEVGWRNDSSQETWRQPLAVSRGAARITVPANSHLLLVKP HHCCCCCCCCHHHHHCCHHHCCCCEEEEECCCCEEEEEEC >Mature Secondary Structure MKEIKKTVLASVILSAMMTACGGGGSSSADGGSGNAPSVAFYQRSAGGVEVGTLDCSGAS CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCC CKVPASASGAASGSVYRYSNTTGRDQTLQLTGPVTSAWQAEFVRISGGDTSTQFKQSGSG EECCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCHHHHHCCCC LRGAGREVADRLEAESQAVLNAVAKNSSNGALQRLQLQHSAKLSGAQAALQQQAYALGDA CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC RTWHDMDGDSPTTLKAVRDLPNGGGKVYVWGQSGLDVGVDNAQADALAERFAGSVYPLEA CCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEH SVVSEPWGNDIHPSWRSLALPGSTKDVHLVLSRLNDPAKTSGGRLLGYVRWTNALLASAA HHHCCCCCCCCCCCHHEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHH SSMCQGDAECADVIGKSNEALVTFIDLDTFAKADSPGNWSMKDNGPSLALSTMAHEYLHV HHHHCCCHHHHHHHCCCCCEEEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH LYAYNKILRQKPGSAPTTVWENELAAQTMGYLVSADTYTGGRGRDANSHPDLRPRGDFEQ HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCHHH FLAKPACNLKGWSVAADDYTCYPKALALGMQMLHQFGPGVMKPWVTGPSKGESALNDGLR HHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHH AVGAGDYGSLLQRLTTTLALGSYSQEVAGFGFPAKTITLPANQYFPAGKILQLPAVRFQA CCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEECCCCCCCCCCEEECCCCEEEH SEVGWRNDSSQETWRQPLAVSRGAARITVPANSHLLLVKP HHCCCCCCCCHHHHHCCHHHCCCCEEEEECCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA