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The map label for this gene is yifB [H]

Identifier: 34499455

GI number: 34499455

Start: 4327407

End: 4328909

Strand: Reverse

Name: yifB [H]

Synonym: CV_4000

Alternate gene names: 34499455

Gene position: 4328909-4327407 (Counterclockwise)

Preceding gene: 34499456

Following gene: 34499454

Centisome position: 91.11

GC content: 69.13

Gene sequence:

>1503_bases
ATGACGCTGGCGGTGGTGGCGAGCAGGGCGTTGTCCGGGCTTGACGCCCCGGAGGTGGCCGTCGAGGTCCACCTGGCCAA
CGGCCTGCCCGCGTTCAACATCGTCGGCCTGCCCGACACCGAGGTGAAGGAAAGCCGGGACCGCGTCCGCGCCGCCATTC
TCACCTCGGGCTTCGAATTTCCCGCCCGCAAGATCACCGTCAATCTCGCTCCGGCCGACCTGCCCAAGGACTCCGGCCGC
TTCGACCTCCCCATCGCCATTGGCATCCTGCTGGCTTCGGGCCAGGTGAAGAACGACGACATCGCCCGTTTCGAATTCGC
CGGCGAGCTGGCGCTCAGCGGCGCGGTGCGCCCGGTGCGCGGCGCCTTGGCGATGGCCTGCCAGTGCCACGCCGCCGGTC
GCGCTTTCGTGCTGCCTGCCGACAGCGCCGGCGAGGCGGCGGTGGTCGGCGGCGCCGCCGTCTACGCGGTGGAGTCCTTG
CCGCAGGCGTGCGCCTTTCTGAACGGTTTGCAGCCGCTGGAACCGTTCGCCGGCGCCATCGGCGGCGAGTGGCCGAACTA
TCCCGATCTGGCCGATGTCAAAGGCCAGTCCATCGCCCGCGGGGCTTTGGAAATCGCCGCGGCAGGCGGACACAGCTTGT
TGCTGATGGGGCCGCCGGGCACCGGCAAGTCCATGCTGGCGGCCAGGCTGCCCGGCCTGCTGCCGCCGTTGTCCGAAACA
GAGGCGCTGGAGAGCGCGGCGGTGCAGTCGCTGGGTTCGCAAGGCTTCCAGCCCGGCCGCTGGCGGGTGCGCCCGTTCAG
GTCGCCCCATCACACCGCTTCCGCGGTGGCGCTGGTCGGCGGCGGCAGTGAGCCGAGGCCGGGCGAGATCAGCCTGGCGC
ATCACGGCGTGCTGTTTCTCGACGAATTGCCGGAGTTCGACCGCAAGGTGCTGGAAGTGCTGCGCGAGCCGCTCGAGAGC
GGGATGATCCATATTTCGCGGGCGGCGAGGCAGGCCAGCTTCCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAATCCCTG
CCCCTGCGGCTACCACGGCCATCCGTCCGGGCGCTGTCAGTGCACTCCCGAGCAGGTGGCGAGATATCGAGGTAAAATCT
CCGGCCCTTTGCTGGACCGCATCGATTTGCAGGTGGAAGTGCCGGCGCTGACCGCGGACGAGCTGCAGCGGTCCGCTGCG
GGGGAGGCCAGCGAGTCGGTGCGCCATCGGGTGCTGACGGCGCGCGATCGCCAGTTGGCGCGGCAGGGCGGGCTGAATGC
GGCATTGCAGGGCGCGGAGCTGGAGCGGCATTGCCTCGGCGACGAGCAGGCGCTGGCGGTGCTGGCCAAGGCATTGCAAC
AACTTGGCTTGTCGGCGCGCGCGTATCATCGGATACTGCGGGTTTCGCGCACCATCGCCGATTTGCAGGGCGCGGAAACG
ATAAACCGCAACCATGTATTGCAGGCGATCCAGCTCAGGCGCGTCATGCAGAGCGGCGCTTGA

Upstream 100 bases:

>100_bases
CGCTGGAGTCGCGCCTGGCCAGGCTTGAGTCCCAGGCGTTTCCGGACGAGGCCGCGGCCAAGGTGGAGGAACAGTCCGAA
CTCGGCCATTCCTGAGCGCC

Downstream 100 bases:

>100_bases
TAGAATTGATCAATCCAACCCGGACGGCGTCTCTGCCGTCCGTATAGACATAGCGGTAGTGGTGAATGGCTAATCGAGAC
CTGAAAAACTCCCCCCGGCC

Product: competence protein ComM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MTLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEFPARKITVNLAPADLPKDSGR
FDLPIAIGILLASGQVKNDDIARFEFAGELALSGAVRPVRGALAMACQCHAAGRAFVLPADSAGEAAVVGGAAVYAVESL
PQACAFLNGLQPLEPFAGAIGGEWPNYPDLADVKGQSIARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPPLSET
EALESAAVQSLGSQGFQPGRWRVRPFRSPHHTASAVALVGGGSEPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLES
GMIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQCTPEQVARYRGKISGPLLDRIDLQVEVPALTADELQRSAA
GEASESVRHRVLTARDRQLARQGGLNAALQGAELERHCLGDEQALAVLAKALQQLGLSARAYHRILRVSRTIADLQGAET
INRNHVLQAIQLRRVMQSGA

Sequences:

>Translated_500_residues
MTLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEFPARKITVNLAPADLPKDSGR
FDLPIAIGILLASGQVKNDDIARFEFAGELALSGAVRPVRGALAMACQCHAAGRAFVLPADSAGEAAVVGGAAVYAVESL
PQACAFLNGLQPLEPFAGAIGGEWPNYPDLADVKGQSIARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPPLSET
EALESAAVQSLGSQGFQPGRWRVRPFRSPHHTASAVALVGGGSEPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLES
GMIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQCTPEQVARYRGKISGPLLDRIDLQVEVPALTADELQRSAA
GEASESVRHRVLTARDRQLARQGGLNAALQGAELERHCLGDEQALAVLAKALQQLGLSARAYHRILRVSRTIADLQGAET
INRNHVLQAIQLRRVMQSGA
>Mature_499_residues
TLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEFPARKITVNLAPADLPKDSGRF
DLPIAIGILLASGQVKNDDIARFEFAGELALSGAVRPVRGALAMACQCHAAGRAFVLPADSAGEAAVVGGAAVYAVESLP
QACAFLNGLQPLEPFAGAIGGEWPNYPDLADVKGQSIARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPPLSETE
ALESAAVQSLGSQGFQPGRWRVRPFRSPHHTASAVALVGGGSEPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPLESG
MIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQCTPEQVARYRGKISGPLLDRIDLQVEVPALTADELQRSAAG
EASESVRHRVLTARDRQLARQGGLNAALQGAELERHCLGDEQALAVLAKALQQLGLSARAYHRILRVSRTIADLQGAETI
NRNHVLQAIQLRRVMQSGA

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=496, Percent_Identity=50.4032258064516, Blast_Score=491, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 52736; Mature: 52605

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50051 MCM_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEF
CCHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
PARKITVNLAPADLPKDSGRFDLPIAIGILLASGQVKNDDIARFEFAGELALSGAVRPVR
CCEEEEEEECCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCHHEECCHHHHCCCCHHHH
GALAMACQCHAAGRAFVLPADSAGEAAVVGGAAVYAVESLPQACAFLNGLQPLEPFAGAI
HHHHHHHHHHCCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GGEWPNYPDLADVKGQSIARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPPLSET
CCCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHH
EALESAAVQSLGSQGFQPGRWRVRPFRSPHHTASAVALVGGGSEPRPGEISLAHHGVLFL
HHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCEEEE
DELPEFDRKVLEVLREPLESGMIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQ
HHCCHHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCHHEEEEEECCCCCCCCCCCCCCCEE
CTPEQVARYRGKISGPLLDRIDLQVEVPALTADELQRSAAGEASESVRHRVLTARDRQLA
ECHHHHHHHCCCCCCCCHHHCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RQGGLNAALQGAELERHCLGDEQALAVLAKALQQLGLSARAYHRILRVSRTIADLQGAET
HHCCCCHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHH
INRNHVLQAIQLRRVMQSGA
CCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLAVVASRALSGLDAPEVAVEVHLANGLPAFNIVGLPDTEVKESRDRVRAAILTSGFEF
CHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCC
PARKITVNLAPADLPKDSGRFDLPIAIGILLASGQVKNDDIARFEFAGELALSGAVRPVR
CCEEEEEEECCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCHHEECCHHHHCCCCHHHH
GALAMACQCHAAGRAFVLPADSAGEAAVVGGAAVYAVESLPQACAFLNGLQPLEPFAGAI
HHHHHHHHHHCCCCEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GGEWPNYPDLADVKGQSIARGALEIAAAGGHSLLLMGPPGTGKSMLAARLPGLLPPLSET
CCCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHH
EALESAAVQSLGSQGFQPGRWRVRPFRSPHHTASAVALVGGGSEPRPGEISLAHHGVLFL
HHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCEEEE
DELPEFDRKVLEVLREPLESGMIHISRAARQASFPARFQLVAAMNPCPCGYHGHPSGRCQ
HHCCHHHHHHHHHHHHHHHCCCEEHHHHHHHCCCCHHEEEEEECCCCCCCCCCCCCCCEE
CTPEQVARYRGKISGPLLDRIDLQVEVPALTADELQRSAAGEASESVRHRVLTARDRQLA
ECHHHHHHHCCCCCCCCHHHCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
RQGGLNAALQGAELERHCLGDEQALAVLAKALQQLGLSARAYHRILRVSRTIADLQGAET
HHCCCCHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHH
INRNHVLQAIQLRRVMQSGA
CCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]