| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499445
Identifier: 34499445
GI number: 34499445
Start: 4317223
End: 4318794
Strand: Direct
Name: 34499445
Synonym: CV_3990
Alternate gene names: NA
Gene position: 4317223-4318794 (Clockwise)
Preceding gene: 34499444
Following gene: 34499446
Centisome position: 90.87
GC content: 56.93
Gene sequence:
>1572_bases ATGTCCTGCGTCAGCGGCAAGCAGGAAGCCCAATGCCAAAGTCAGATCCACGTGATGATGTTCTTCGATGGCACGGGCAA CAATATCCAGGCTGACTATTACCAGGCGGCATCGGGCAAACAGCGCCCCAGCAATGTCGCCCGCCTATTCATGACGGCGC GAGACAAGCCAAACGAGGGCTATTTCCGTTTTTACATGCCAGGAGTTGGTACCCCATTCCCGGAAATCGACGACACGGGG GGAGCCTTGGGCGGTGGCGCCGGCGCGGGCGGAGAGGCGCGCATTCTTTGGGCGCTGACGCGCCTGGTGAATGCACCCCA CCAGTATGTCAACAAAAGTCCGCTGATCGCCGATGGCTTGGCCAAGAAAATTACCAGCAATGCCGGCGGCCTGACCGGGG GCGTCATGCGCAAAGTGATTTTCAATACTTGGCAGGAAAAGCTACAGCAGGCGCTGAAGGGACGCAAACCCCAGATCACA CAGATCAACCTGTCGGTATTCGGATTTTCACGCGGCGCCACAGAGGCGCGGGCATTCGTCAACTGGCTGTATCAAATATG TCATCAGCAAAATGGCGCATGGAGCTTTGCCGGCATTTCACTCCGAACACAGTTTCTTGGGATCATGGACACGGTGGCAT CGGTAGGCCTTGCGCAACTGCTGCCCAATACCATACCCGCAACCGGGCACATGGCTTGGGCCGACAACAATCTGACCATC CATCCCGCAGTCGAGCAATGCGTGCATTACGTTGCCGGCCATGAAGTGCGCGCCTGCTTCCCGCTGGACACCGTGCGGCG CGGCAACTCATATCCAGCCAATACCATCGAAGTCATGTTCCCGGGCTCGCACTCGGATGTCGGAGGCGGTTATGCCAGCG GCGACCTAGGCATACTGCCCGCGCAAAATGGCCAACTGTGCGCGATACCGGGACGCCGGCTGTACGATGCCGCTCGCCAA GCAGGTGTGCCCCTCCTGGCAATGGACCAGTTGACTGAACGGGTGCAAAACCTTCTGACGCCGACTCAAGAGGTCATCAA CGACTTTAACGCTTATTTGCGTGAAGCCAAGATTGCTCCAGGCTCGACAGAAAAGATGCATCGCCAGCACATGGCCCTAT ATCTGAGCCAACGATTCAAATACCGGCATGACTTTGCCAAGCGCGCGCCATATCGAACCGCCAGCGCCAAGCATCAAGGC TTTTTGCAGATTACCCAGGCATCGCTGATCAAGGGACTGCGCAAACTCTACGCCGGCGACCCAATGGCGCCTGATTTTGA CCCCGCCCGCGCCGCCGCGAAAGCAGCCAAACAGGAGCAAGAGCTGCAAAAACTAATGCCGATGCTGCCAGAGCAAGGCA TGTCCATTCCCAGCGAAGTGCTGCCCGAAACCGATCCCAAAAAGGTCGCGGCCACGATGAATATTCGCCTGCTGACTCCG GCGATTGAGAACTTCCTGGAGAAATATATCCATGACTCCATGGCCGGCTTTATCGGCGATGGGGTAAATGAGGCCAAAAT CAATCAGATCGGCCTGCTTAAATTCCGTACCTTGTATGCAGGCAATGAGTAA
Upstream 100 bases:
>100_bases ATACCCAAGGGGATAAACAATGAGCACGCAAAACCCCGCCCCCTACCCAGCAGGCCAACGCTCACTGAGTGCTCGCGAAC AACTGCAACGAGCTCAGGCC
Downstream 100 bases:
>100_bases CGCGCCGGTCGTCAGCCATAGACTGATGGCAAGCAGCCTGCTCAGTCTATTCCTGAGCAATGCGCATGCCGGCGACCATC CCGACAATGCGGCAGTCACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 523; Mature: 522
Protein sequence:
>523_residues MSCVSGKQEAQCQSQIHVMMFFDGTGNNIQADYYQAASGKQRPSNVARLFMTARDKPNEGYFRFYMPGVGTPFPEIDDTG GALGGGAGAGGEARILWALTRLVNAPHQYVNKSPLIADGLAKKITSNAGGLTGGVMRKVIFNTWQEKLQQALKGRKPQIT QINLSVFGFSRGATEARAFVNWLYQICHQQNGAWSFAGISLRTQFLGIMDTVASVGLAQLLPNTIPATGHMAWADNNLTI HPAVEQCVHYVAGHEVRACFPLDTVRRGNSYPANTIEVMFPGSHSDVGGGYASGDLGILPAQNGQLCAIPGRRLYDAARQ AGVPLLAMDQLTERVQNLLTPTQEVINDFNAYLREAKIAPGSTEKMHRQHMALYLSQRFKYRHDFAKRAPYRTASAKHQG FLQITQASLIKGLRKLYAGDPMAPDFDPARAAAKAAKQEQELQKLMPMLPEQGMSIPSEVLPETDPKKVAATMNIRLLTP AIENFLEKYIHDSMAGFIGDGVNEAKINQIGLLKFRTLYAGNE
Sequences:
>Translated_523_residues MSCVSGKQEAQCQSQIHVMMFFDGTGNNIQADYYQAASGKQRPSNVARLFMTARDKPNEGYFRFYMPGVGTPFPEIDDTG GALGGGAGAGGEARILWALTRLVNAPHQYVNKSPLIADGLAKKITSNAGGLTGGVMRKVIFNTWQEKLQQALKGRKPQIT QINLSVFGFSRGATEARAFVNWLYQICHQQNGAWSFAGISLRTQFLGIMDTVASVGLAQLLPNTIPATGHMAWADNNLTI HPAVEQCVHYVAGHEVRACFPLDTVRRGNSYPANTIEVMFPGSHSDVGGGYASGDLGILPAQNGQLCAIPGRRLYDAARQ AGVPLLAMDQLTERVQNLLTPTQEVINDFNAYLREAKIAPGSTEKMHRQHMALYLSQRFKYRHDFAKRAPYRTASAKHQG FLQITQASLIKGLRKLYAGDPMAPDFDPARAAAKAAKQEQELQKLMPMLPEQGMSIPSEVLPETDPKKVAATMNIRLLTP AIENFLEKYIHDSMAGFIGDGVNEAKINQIGLLKFRTLYAGNE >Mature_522_residues SCVSGKQEAQCQSQIHVMMFFDGTGNNIQADYYQAASGKQRPSNVARLFMTARDKPNEGYFRFYMPGVGTPFPEIDDTGG ALGGGAGAGGEARILWALTRLVNAPHQYVNKSPLIADGLAKKITSNAGGLTGGVMRKVIFNTWQEKLQQALKGRKPQITQ INLSVFGFSRGATEARAFVNWLYQICHQQNGAWSFAGISLRTQFLGIMDTVASVGLAQLLPNTIPATGHMAWADNNLTIH PAVEQCVHYVAGHEVRACFPLDTVRRGNSYPANTIEVMFPGSHSDVGGGYASGDLGILPAQNGQLCAIPGRRLYDAARQA GVPLLAMDQLTERVQNLLTPTQEVINDFNAYLREAKIAPGSTEKMHRQHMALYLSQRFKYRHDFAKRAPYRTASAKHQGF LQITQASLIKGLRKLYAGDPMAPDFDPARAAAKAAKQEQELQKLMPMLPEQGMSIPSEVLPETDPKKVAATMNIRLLTPA IENFLEKYIHDSMAGFIGDGVNEAKINQIGLLKFRTLYAGNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57245; Mature: 57114
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCVSGKQEAQCQSQIHVMMFFDGTGNNIQADYYQAASGKQRPSNVARLFMTARDKPNEG CCCCCCCHHHHHHCCEEEEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC YFRFYMPGVGTPFPEIDDTGGALGGGAGAGGEARILWALTRLVNAPHQYVNKSPLIADGL EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHHHH AKKITSNAGGLTGGVMRKVIFNTWQEKLQQALKGRKPQITQINLSVFGFSRGATEARAFV HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHH NWLYQICHQQNGAWSFAGISLRTQFLGIMDTVASVGLAQLLPNTIPATGHMAWADNNLTI HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEE HPAVEQCVHYVAGHEVRACFPLDTVRRGNSYPANTIEVMFPGSHSDVGGGYASGDLGILP CHHHHHHHHHHCCCCEEEECCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE AQNGQLCAIPGRRLYDAARQAGVPLLAMDQLTERVQNLLTPTQEVINDFNAYLREAKIAP CCCCCEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC GSTEKMHRQHMALYLSQRFKYRHDFAKRAPYRTASAKHQGFLQITQASLIKGLRKLYAGD CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC PMAPDFDPARAAAKAAKQEQELQKLMPMLPEQGMSIPSEVLPETDPKKVAATMNIRLLTP CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHEEEEEEEEEECH AIENFLEKYIHDSMAGFIGDGVNEAKINQIGLLKFRTLYAGNE HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHEEHHHHCCCC >Mature Secondary Structure SCVSGKQEAQCQSQIHVMMFFDGTGNNIQADYYQAASGKQRPSNVARLFMTARDKPNEG CCCCCCHHHHHHCCEEEEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCC YFRFYMPGVGTPFPEIDDTGGALGGGAGAGGEARILWALTRLVNAPHQYVNKSPLIADGL EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHHHH AKKITSNAGGLTGGVMRKVIFNTWQEKLQQALKGRKPQITQINLSVFGFSRGATEARAFV HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHH NWLYQICHQQNGAWSFAGISLRTQFLGIMDTVASVGLAQLLPNTIPATGHMAWADNNLTI HHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEE HPAVEQCVHYVAGHEVRACFPLDTVRRGNSYPANTIEVMFPGSHSDVGGGYASGDLGILP CHHHHHHHHHHCCCCEEEECCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE AQNGQLCAIPGRRLYDAARQAGVPLLAMDQLTERVQNLLTPTQEVINDFNAYLREAKIAP CCCCCEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC GSTEKMHRQHMALYLSQRFKYRHDFAKRAPYRTASAKHQGFLQITQASLIKGLRKLYAGD CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC PMAPDFDPARAAAKAAKQEQELQKLMPMLPEQGMSIPSEVLPETDPKKVAATMNIRLLTP CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHEEEEEEEEEECH AIENFLEKYIHDSMAGFIGDGVNEAKINQIGLLKFRTLYAGNE HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHEEHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA