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The map label for this gene is hcp1 [H]

Identifier: 34499432

GI number: 34499432

Start: 4301111

End: 4301608

Strand: Reverse

Name: hcp1 [H]

Synonym: CV_3977

Alternate gene names: 34499432

Gene position: 4301608-4301111 (Counterclockwise)

Preceding gene: 34499433

Following gene: 34499431

Centisome position: 90.54

GC content: 59.04

Gene sequence:

>498_bases
ATGGCTTTTGATGCATTTCTGAAAATCGATGGCATTCCTGGCGAAAGCGGCGACGACAAGCACAAAGACTGGATCGAAAT
CCAATCGTTCAGCCACAAGCTGGAACAACCGGCCCAGGCTTCCGCCAGCACCGCCGGCGGCGCTACCGCCGAACGCGTGA
ACCACGGCGTGTACGAAATCACCCACTTCCTGGACAAAGCCAGCCCGAAGATCTACGAAGCTTGCTGCACCGGCAAGCAC
ATCAAGGAGATCACCATCGAGCTGTGCCGCGCGGGTGGCGACAAGGTGAAGTACATGGAAATCAAGATGGAACAAGTCCT
GATCTCCAAGGTTGAGCCGCACGGCTCCGCCACCGACAGCGGCTTCCCGGCCGAAAAGGTGAGCTTCAGCTACGGCAAGA
TCAAGTGGACCTACACCCAGCAGAAGCGCGCCGACGGCGCCGGCGGCGGCAATGTCAGCGCCGGTTGGGACCTGACCGCG
AACAAAGTAATCGCCTAA

Upstream 100 bases:

>100_bases
GGTGGCCGAGCTGCCGCAACCGGCGGGCTAACGCGACGCATTGATCAGCTTGGGGGAGTCCCGCCCCCATTTTTTGAACC
TTGTTTAAGGAGAAGTACTG

Downstream 100 bases:

>100_bases
TTCCAGCGATGGAATTCTGACCCGCCCGGCCCCGGGCGGGTTTTTAAGTTTTTTTTAACTTGGGGAAAGTCGCTATGAAA
CGTTTGTTGATCGCCGTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MAFDAFLKIDGIPGESGDDKHKDWIEIQSFSHKLEQPAQASASTAGGATAERVNHGVYEITHFLDKASPKIYEACCTGKH
IKEITIELCRAGGDKVKYMEIKMEQVLISKVEPHGSATDSGFPAEKVSFSYGKIKWTYTQQKRADGAGGGNVSAGWDLTA
NKVIA

Sequences:

>Translated_165_residues
MAFDAFLKIDGIPGESGDDKHKDWIEIQSFSHKLEQPAQASASTAGGATAERVNHGVYEITHFLDKASPKIYEACCTGKH
IKEITIELCRAGGDKVKYMEIKMEQVLISKVEPHGSATDSGFPAEKVSFSYGKIKWTYTQQKRADGAGGGNVSAGWDLTA
NKVIA
>Mature_164_residues
AFDAFLKIDGIPGESGDDKHKDWIEIQSFSHKLEQPAQASASTAGGATAERVNHGVYEITHFLDKASPKIYEACCTGKHI
KEITIELCRAGGDKVKYMEIKMEQVLISKVEPHGSATDSGFPAEKVSFSYGKIKWTYTQQKRADGAGGGNVSAGWDLTAN
KVIA

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17893; Mature: 17762

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDAFLKIDGIPGESGDDKHKDWIEIQSFSHKLEQPAQASASTAGGATAERVNHGVYEI
CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHCCHHHH
THFLDKASPKIYEACCTGKHIKEITIELCRAGGDKVKYMEIKMEQVLISKVEPHGSATDS
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCCCC
GFPAEKVSFSYGKIKWTYTQQKRADGAGGGNVSAGWDLTANKVIA
CCCHHHEECCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFDAFLKIDGIPGESGDDKHKDWIEIQSFSHKLEQPAQASASTAGGATAERVNHGVYEI
CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHCCHHHH
THFLDKASPKIYEACCTGKHIKEITIELCRAGGDKVKYMEIKMEQVLISKVEPHGSATDS
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCCCCCC
GFPAEKVSFSYGKIKWTYTQQKRADGAGGGNVSAGWDLTANKVIA
CCCHHHEECCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]