Click here to switch to the map view.

The map label for this gene is clpV1 [H]

Identifier: 34499420

GI number: 34499420

Start: 4286490

End: 4289117

Strand: Reverse

Name: clpV1 [H]

Synonym: CV_3965

Alternate gene names: 34499420

Gene position: 4289117-4286490 (Counterclockwise)

Preceding gene: 34499421

Following gene: 34499419

Centisome position: 90.28

GC content: 68.72

Gene sequence:

>2628_bases
CTGAAATCCCTGATAGACCGGTTGACGCCCACCGCGCGCCAGGCCATCGAGCAGGCCGCCAGCCGCGCGCTGGCCCGCAC
CCACTTCGAGATCGAGATCGAGCATGTGCTGCTGGCGATGTTCGATCAGGACGACAATGCCGCGCTGGCGGCGCTGCGCG
CGCTGGGCGCGGACCTGGGCCGCGTCGAGCGCGAGCTGGACGCCGCGCTGGACAACTTCCGCAGCGGCAATACCCGCAAT
CCGGTGCTGTCGTCGTGGCTGCCCAAGTGGCTGGAAAAGGCCTGGCTGCTGGCCAGCGCCGAGCACGGCCAGGACAGTGT
CTCCACGTTGGACTTGCTGCTGGCGCTGTGGCAGGACGACGCCCTGCGCGGCGCGCTGCAGTCCGGCGCGCCGGCATTGG
CGCGCCAGGATGCCGGCAGGCTGTCCGGCGCCTACGCCGCGCTGCGCCAGCACGGCGGCGAGGCGGCGGGCGGCGAGCAG
CCGTCGGCCGCGGCAGACGAGGGCGAAGGCGAGGCGCCGGCCGCGCCGCAGGGCAAGCGCGGCGGCGCCGCGCTGGACAA
GTACACGATAGACCTGACCGCGCAGGCCAAGGCCGGCAAGATCGACCCCATCCTGGGCCGCGATGTCGAAATCCGCCAGA
TGATAGACATCCTGATGCGCCGCCGGCAGAACAATCCCATCCTCACCGGCGAGCCGGGCGTGGGCAAGACCGCGGTGGTG
GAAGGCTTGGCGCGCAAGATCGTGCTGGGCGAGGTGCCGCCGGTGCTGTCCGGCGTCACGCTGCGCACGCTGGACCTGGG
CCTGCTGCAGGCCGGCGCCAGCGTCAAGGGCGAGTTCGAGAACCGCCTGCGCCAGGTGATAGACGAGGTCAAGGCCAGCC
CGGTGCCCATCATCCTGTTCATCGACGAGGCGCACACCCTGATCGGCGCCGGCGGCGCGGCCGGCCAGAACGACGCGGCC
AACCTGCTGAAACCGGCGCTGGCGCGCGGCGAGCTGCGCACCATCGCGGCGACGACCTGGGCCGAGTACAAGAAGTATTT
CGAGAAGGACGCCGCGCTGGCGCGCCGCTTCCAGGTGGTGAAGGTCGAAGAGCCGGCGCCGGAAATCGCCGTGCAGATGG
TGCGCGGCCTGACCGACGCGATGGCCAAGCACCACAAGGTGGAAATCCTCAACGAGGCGGTGGCCGCCGCAGTGCAGCTG
TCCAGCCGCTACATCGCCGGCCGCCAGCTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCTTGCGCCCGCGTCGCGCT
GTCGCGCGCCGGCAAGCCGGGGCCGATCGAGGACGTGACGGTGCTGATAGACAACATCGACCGCGAAACCGCCGCGCTGG
AGCGCGAGGAAGGCCACGCCGAGCGCATCGCCGAGCTGCAGGCGCAGCGCGCCAAGCTGGAGCAGGATCTGGCCGCGCTG
CATCAGGCCTGGGAGGCGCAGCAGAAGCTGATCGAAGAGATAGACGAGCTGAAGGCGGCCAAGGACGAGGCCAAGCCGGC
CAAGGGCAGGAAGCTCAGCCCGCTGCAGGCCAAGCGCAAGGAATTGCGCGAGTTGCAGAAGCATCAGCCGCTGGCGTTCG
AATGCGTGGACGAGAGCGTGATCGCCGACGTGATCGCCGGCTGGACCGGCATCCCGCTGGGCCGCATGGTCAGCAACGAG
CTGGAGCAGGTGCAGAAGCTGGCCAAGCTGCTGGCCGAGCGCGTGATCGGCCAGGACCACGCGTTGGAGCAGATCGCCGA
GCGGGTGCAGATCGCCAAGGCCAATCTGGAAGATCCCGGCAAGCCCAAGGGCGTATTCCTGCTGGTGGGCCCGTCCGGCG
TCGGCAAGACCGAGACCGCGCTGGCGCTGGCCGAGGCGCTGTACGGCGGCGAGCGCAATCTGATCACCATCAACATGTCC
GAATACCAGGAAGCGCACAGCGTGTCCGGCCTGAAGGGCTCGCCCCCGGGTTATGTCGGCTACGGCGAGGGCGGCGTGCT
GACCGAGGCGGTGCGCCGCAAGCCGTACTCCGTCGTGCTGCTGGATGAAGTGGAGAAGGCGCACCCGGACGTGCTGGAGC
TGTTCTTTCAGGTATTCGACAAGGGCGTGCTGGAGGATAGCGAAGGCCGCGAGGTGGACTTCAAGAACACCATCATCCTG
CTGACGTCCAACGCCGGCACCGATCTGGTGATGCGCGCCTGCGAGCACGGCGTGACGGTGGAGGACGAGACCCGCGACCC
GACCGCGGAAGACCTGGTGGAAATCCTGCGCCCGACGCTGCAGAAGACCTTCAAGCCGGCTTTCCTCGGCCGCCTGACCA
TCGTGCCTTACTTCCCGATCAGCGACGACGTGCTGCGCGCCATCGTCGGCCTGAAGCTGGACAAGATCCGCCGCCGCATC
GCCGACAACCACGGCGCCCAGGTCGAGTTCCCGGAAGAACTGGCCGATCAGATGGCCGCGCGCTGCCTGGACGTGGACAG
CGGCGCGCGCAACGCCGACGCCATCCTCACCCGCACGCTGCTGGCGCAGATCTCCAACGACCTGCTGTCGCGTATGGCCA
GCGGCAAACCGGTGAAGAAGATCGCCGTCGCGCTGAAGGGCGAGCAGGTCAAGGTGAAGGTGAGTTAA

Upstream 100 bases:

>100_bases
GCGCCGCTGGCTGGACGAGATGATGCCGGTCGCCGCCGCCAACGATGAATGATTTGAATCCATACCTTTAGAAAACGAGT
ACAAGCATATGTCCGTATCG

Downstream 100 bases:

>100_bases
GGAGCATTCGCGATGTGGAGAACCTTGGGCCTGTTCGGCGGCGTCACCATAGGCTGGTGGGCGCTGCTGTGGCTGGTGTT
GCCGCAGAGCTGGCAGCGCA

Product: ClpA/B-type chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 875; Mature: 875

Protein sequence:

>875_residues
MKSLIDRLTPTARQAIEQAASRALARTHFEIEIEHVLLAMFDQDDNAALAALRALGADLGRVERELDAALDNFRSGNTRN
PVLSSWLPKWLEKAWLLASAEHGQDSVSTLDLLLALWQDDALRGALQSGAPALARQDAGRLSGAYAALRQHGGEAAGGEQ
PSAAADEGEGEAPAAPQGKRGGAALDKYTIDLTAQAKAGKIDPILGRDVEIRQMIDILMRRRQNNPILTGEPGVGKTAVV
EGLARKIVLGEVPPVLSGVTLRTLDLGLLQAGASVKGEFENRLRQVIDEVKASPVPIILFIDEAHTLIGAGGAAGQNDAA
NLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPAPEIAVQMVRGLTDAMAKHHKVEILNEAVAAAVQL
SSRYIAGRQLPDKAISVLDTACARVALSRAGKPGPIEDVTVLIDNIDRETAALEREEGHAERIAELQAQRAKLEQDLAAL
HQAWEAQQKLIEEIDELKAAKDEAKPAKGRKLSPLQAKRKELRELQKHQPLAFECVDESVIADVIAGWTGIPLGRMVSNE
LEQVQKLAKLLAERVIGQDHALEQIAERVQIAKANLEDPGKPKGVFLLVGPSGVGKTETALALAEALYGGERNLITINMS
EYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLEDSEGREVDFKNTIIL
LTSNAGTDLVMRACEHGVTVEDETRDPTAEDLVEILRPTLQKTFKPAFLGRLTIVPYFPISDDVLRAIVGLKLDKIRRRI
ADNHGAQVEFPEELADQMAARCLDVDSGARNADAILTRTLLAQISNDLLSRMASGKPVKKIAVALKGEQVKVKVS

Sequences:

>Translated_875_residues
MKSLIDRLTPTARQAIEQAASRALARTHFEIEIEHVLLAMFDQDDNAALAALRALGADLGRVERELDAALDNFRSGNTRN
PVLSSWLPKWLEKAWLLASAEHGQDSVSTLDLLLALWQDDALRGALQSGAPALARQDAGRLSGAYAALRQHGGEAAGGEQ
PSAAADEGEGEAPAAPQGKRGGAALDKYTIDLTAQAKAGKIDPILGRDVEIRQMIDILMRRRQNNPILTGEPGVGKTAVV
EGLARKIVLGEVPPVLSGVTLRTLDLGLLQAGASVKGEFENRLRQVIDEVKASPVPIILFIDEAHTLIGAGGAAGQNDAA
NLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPAPEIAVQMVRGLTDAMAKHHKVEILNEAVAAAVQL
SSRYIAGRQLPDKAISVLDTACARVALSRAGKPGPIEDVTVLIDNIDRETAALEREEGHAERIAELQAQRAKLEQDLAAL
HQAWEAQQKLIEEIDELKAAKDEAKPAKGRKLSPLQAKRKELRELQKHQPLAFECVDESVIADVIAGWTGIPLGRMVSNE
LEQVQKLAKLLAERVIGQDHALEQIAERVQIAKANLEDPGKPKGVFLLVGPSGVGKTETALALAEALYGGERNLITINMS
EYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLEDSEGREVDFKNTIIL
LTSNAGTDLVMRACEHGVTVEDETRDPTAEDLVEILRPTLQKTFKPAFLGRLTIVPYFPISDDVLRAIVGLKLDKIRRRI
ADNHGAQVEFPEELADQMAARCLDVDSGARNADAILTRTLLAQISNDLLSRMASGKPVKKIAVALKGEQVKVKVS
>Mature_875_residues
MKSLIDRLTPTARQAIEQAASRALARTHFEIEIEHVLLAMFDQDDNAALAALRALGADLGRVERELDAALDNFRSGNTRN
PVLSSWLPKWLEKAWLLASAEHGQDSVSTLDLLLALWQDDALRGALQSGAPALARQDAGRLSGAYAALRQHGGEAAGGEQ
PSAAADEGEGEAPAAPQGKRGGAALDKYTIDLTAQAKAGKIDPILGRDVEIRQMIDILMRRRQNNPILTGEPGVGKTAVV
EGLARKIVLGEVPPVLSGVTLRTLDLGLLQAGASVKGEFENRLRQVIDEVKASPVPIILFIDEAHTLIGAGGAAGQNDAA
NLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVVKVEEPAPEIAVQMVRGLTDAMAKHHKVEILNEAVAAAVQL
SSRYIAGRQLPDKAISVLDTACARVALSRAGKPGPIEDVTVLIDNIDRETAALEREEGHAERIAELQAQRAKLEQDLAAL
HQAWEAQQKLIEEIDELKAAKDEAKPAKGRKLSPLQAKRKELRELQKHQPLAFECVDESVIADVIAGWTGIPLGRMVSNE
LEQVQKLAKLLAERVIGQDHALEQIAERVQIAKANLEDPGKPKGVFLLVGPSGVGKTETALALAEALYGGERNLITINMS
EYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLEDSEGREVDFKNTIIL
LTSNAGTDLVMRACEHGVTVEDETRDPTAEDLVEILRPTLQKTFKPAFLGRLTIVPYFPISDDVLRAIVGLKLDKIRRRI
ADNHGAQVEFPEELADQMAARCLDVDSGARNADAILTRTLLAQISNDLLSRMASGKPVKKIAVALKGEQVKVKVS

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=302, Percent_Identity=33.4437086092715, Blast_Score=162, Evalue=2e-39,
Organism=Escherichia coli, GI1788943, Length=880, Percent_Identity=38.2954545454545, Blast_Score=535, Evalue=1e-153,
Organism=Escherichia coli, GI1787109, Length=445, Percent_Identity=36.8539325842697, Blast_Score=258, Evalue=1e-69,
Organism=Saccharomyces cerevisiae, GI6320464, Length=698, Percent_Identity=39.3982808022923, Blast_Score=456, Evalue=1e-129,
Organism=Saccharomyces cerevisiae, GI6323002, Length=698, Percent_Identity=35.8166189111748, Blast_Score=429, Evalue=1e-121,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: 3.4.21.92

Molecular weight: Translated: 94649; Mature: 94649

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLIDRLTPTARQAIEQAASRALARTHFEIEIEHVLLAMFDQDDNAALAALRALGADLG
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RVERELDAALDNFRSGNTRNPVLSSWLPKWLEKAWLLASAEHGQDSVSTLDLLLALWQDD
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ALRGALQSGAPALARQDAGRLSGAYAALRQHGGEAAGGEQPSAAADEGEGEAPAAPQGKR
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGAALDKYTIDLTAQAKAGKIDPILGRDVEIRQMIDILMRRRQNNPILTGEPGVGKTAVV
CCCCHHEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
EGLARKIVLGEVPPVLSGVTLRTLDLGLLQAGASVKGEFENRLRQVIDEVKASPVPIILF
HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
IDEAHTLIGAGGAAGQNDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVV
ECCCCHHEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
KVEEPAPEIAVQMVRGLTDAMAKHHKVEILNEAVAAAVQLSSRYIAGRQLPDKAISVLDT
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ACARVALSRAGKPGPIEDVTVLIDNIDRETAALEREEGHAERIAELQAQRAKLEQDLAAL
HHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
HQAWEAQQKLIEEIDELKAAKDEAKPAKGRKLSPLQAKRKELRELQKHQPLAFECVDESV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHH
IADVIAGWTGIPLGRMVSNELEQVQKLAKLLAERVIGQDHALEQIAERVQIAKANLEDPG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
KPKGVFLLVGPSGVGKTETALALAEALYGGERNLITINMSEYQEAHSVSGLKGSPPGYVG
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEC
YGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLEDSEGREVDFKNTIIL
CCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
LTSNAGTDLVMRACEHGVTVEDETRDPTAEDLVEILRPTLQKTFKPAFLGRLTIVPYFPI
EECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCEEEEEECCC
SDDVLRAIVGLKLDKIRRRIADNHGAQVEFPEELADQMAARCLDVDSGARNADAILTRTL
CHHHHHHHHCCHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LAQISNDLLSRMASGKPVKKIAVALKGEQVKVKVS
HHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEC
>Mature Secondary Structure
MKSLIDRLTPTARQAIEQAASRALARTHFEIEIEHVLLAMFDQDDNAALAALRALGADLG
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RVERELDAALDNFRSGNTRNPVLSSWLPKWLEKAWLLASAEHGQDSVSTLDLLLALWQDD
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ALRGALQSGAPALARQDAGRLSGAYAALRQHGGEAAGGEQPSAAADEGEGEAPAAPQGKR
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGAALDKYTIDLTAQAKAGKIDPILGRDVEIRQMIDILMRRRQNNPILTGEPGVGKTAVV
CCCCHHEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
EGLARKIVLGEVPPVLSGVTLRTLDLGLLQAGASVKGEFENRLRQVIDEVKASPVPIILF
HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
IDEAHTLIGAGGAAGQNDAANLLKPALARGELRTIAATTWAEYKKYFEKDAALARRFQVV
ECCCCHHEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
KVEEPAPEIAVQMVRGLTDAMAKHHKVEILNEAVAAAVQLSSRYIAGRQLPDKAISVLDT
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ACARVALSRAGKPGPIEDVTVLIDNIDRETAALEREEGHAERIAELQAQRAKLEQDLAAL
HHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
HQAWEAQQKLIEEIDELKAAKDEAKPAKGRKLSPLQAKRKELRELQKHQPLAFECVDESV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHH
IADVIAGWTGIPLGRMVSNELEQVQKLAKLLAERVIGQDHALEQIAERVQIAKANLEDPG
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
KPKGVFLLVGPSGVGKTETALALAEALYGGERNLITINMSEYQEAHSVSGLKGSPPGYVG
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCEEC
YGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFFQVFDKGVLEDSEGREVDFKNTIIL
CCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
LTSNAGTDLVMRACEHGVTVEDETRDPTAEDLVEILRPTLQKTFKPAFLGRLTIVPYFPI
EECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCEEEEEECCC
SDDVLRAIVGLKLDKIRRRIADNHGAQVEFPEELADQMAARCLDVDSGARNADAILTRTL
CHHHHHHHHCCHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LAQISNDLLSRMASGKPVKKIAVALKGEQVKVKVS
HHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]