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The map label for this gene is ddpX [H]

Identifier: 34499390

GI number: 34499390

Start: 4254873

End: 4255484

Strand: Reverse

Name: ddpX [H]

Synonym: CV_3935

Alternate gene names: 34499390

Gene position: 4255484-4254873 (Counterclockwise)

Preceding gene: 34499395

Following gene: 34499389

Centisome position: 89.57

GC content: 66.99

Gene sequence:

>612_bases
ATGACGGGGACGATCAGGCTCGAGGAGCTGGAAAACCATTCCGAATACGTGTCCATCGCGGGCATGGCCGGCGTGAGGCT
GGATTTGCGCTATGCCAGCGACGACAACTTCGTCGGCCGCGATCTATACGGCCCGTCGGCGCATGCGCTGCTGCACCGAG
AGGCCGCCCGCCGGCTGGCCCGCGCCGCGCGCGAGCTGGCAAGCCGGCGAGCCGGATACAGACTGCGTGTTTTCGACGCG
CTGCGGCCCGGCCGCGTGCAGCGGGTGCTTTGGGACATCGTCAAGGACACGCCGCAACGCATTTACGTCGCCGACCCCGC
GCGCGGCTCCATTCACAGCTTCGGCATGGCGGTGGACATTACGGTGGAGGATGGACAGGGACGGGAGCTGGACATGGGCA
CCGGTTTCGACGATTTCACCGAGCGCGCCCAGCCGCAGCGGGAAGCGGAGATGCTGGAGAGAGGACTGCTCAGCGACGCC
CAGCTGGACAATCGGCTGCTGCTGCGCGGCTGCATGGCGGCGGGCGGTTTTCGCGGCATCGCCACCGAGTGGTGGCATTT
CGAGGCGGCGGACCGCGATTGGGTGCGCGCCCATATGCGCTTGATCGAATAA

Upstream 100 bases:

>100_bases
CGCGTCGGTATCGATATGCCTGCAGAGTATCGCACACTCCGGGTCCGCGACCGAGTGGGGGGAGCGGCAGGTTTGTTTCA
GATCAGCGGGAGGCGGGGCG

Downstream 100 bases:

>100_bases
GCGCCCATCCGCGGGCTTCCCTGCGATTCCGCATGAGGCCGATTCTTCCTTCACCTGCGTGCATCTGATCTGGCGGCCTT
CGGCAGGCCCGCGACAATGC

Product: d-alanyl-d-alanine dipeptidase

Products: NA

Alternate protein names: D-Ala-D-Ala dipeptidase [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTGTIRLEELENHSEYVSIAGMAGVRLDLRYASDDNFVGRDLYGPSAHALLHREAARRLARAARELASRRAGYRLRVFDA
LRPGRVQRVLWDIVKDTPQRIYVADPARGSIHSFGMAVDITVEDGQGRELDMGTGFDDFTERAQPQREAEMLERGLLSDA
QLDNRLLLRGCMAAGGFRGIATEWWHFEAADRDWVRAHMRLIE

Sequences:

>Translated_203_residues
MTGTIRLEELENHSEYVSIAGMAGVRLDLRYASDDNFVGRDLYGPSAHALLHREAARRLARAARELASRRAGYRLRVFDA
LRPGRVQRVLWDIVKDTPQRIYVADPARGSIHSFGMAVDITVEDGQGRELDMGTGFDDFTERAQPQREAEMLERGLLSDA
QLDNRLLLRGCMAAGGFRGIATEWWHFEAADRDWVRAHMRLIE
>Mature_202_residues
TGTIRLEELENHSEYVSIAGMAGVRLDLRYASDDNFVGRDLYGPSAHALLHREAARRLARAARELASRRAGYRLRVFDAL
RPGRVQRVLWDIVKDTPQRIYVADPARGSIHSFGMAVDITVEDGQGRELDMGTGFDDFTERAQPQREAEMLERGLLSDAQ
LDNRLLLRGCMAAGGFRGIATEWWHFEAADRDWVRAHMRLIE

Specific function: Hydrolyzes D-Ala-D-Ala. May have a role in cell-wall turnover [H]

COG id: COG2173

COG function: function code M; D-alanyl-D-alanine dipeptidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15D family [H]

Homologues:

Organism=Escherichia coli, GI1787763, Length=180, Percent_Identity=38.3333333333333, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR000755 [H]

Pfam domain/function: PF01427 Peptidase_M15 [H]

EC number: =3.4.13.22 [H]

Molecular weight: Translated: 23025; Mature: 22894

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTIRLEELENHSEYVSIAGMAGVRLDLRYASDDNFVGRDLYGPSAHALLHREAARRLA
CCCCEEHHHHHCCHHEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RAARELASRRAGYRLRVFDALRPGRVQRVLWDIVKDTPQRIYVADPARGSIHSFGMAVDI
HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCEEEEE
TVEDGQGRELDMGTGFDDFTERAQPQREAEMLERGLLSDAQLDNRLLLRGCMAAGGFRGI
EEECCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
ATEWWHFEAADRDWVRAHMRLIE
CCHHEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TGTIRLEELENHSEYVSIAGMAGVRLDLRYASDDNFVGRDLYGPSAHALLHREAARRLA
CCCEEHHHHHCCHHEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
RAARELASRRAGYRLRVFDALRPGRVQRVLWDIVKDTPQRIYVADPARGSIHSFGMAVDI
HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCEEEEE
TVEDGQGRELDMGTGFDDFTERAQPQREAEMLERGLLSDAQLDNRLLLRGCMAAGGFRGI
EEECCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
ATEWWHFEAADRDWVRAHMRLIE
CCHHEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]