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The map label for this gene is rbgA [H]

Identifier: 34499367

GI number: 34499367

Start: 4225484

End: 4226422

Strand: Reverse

Name: rbgA [H]

Synonym: CV_3912

Alternate gene names: 34499367

Gene position: 4226422-4225484 (Counterclockwise)

Preceding gene: 34499368

Following gene: 34499363

Centisome position: 88.96

GC content: 67.2

Gene sequence:

>939_bases
ATGGCAATCCAATGGTTTCCCGGCCATATGAACAAGGCGCGCAAGGATGTTTCCGAGCGCCTGAAGGATATCGACGTCGT
CATCGAGATGCTGGATGCCCGCCTGCCGGCGTCCAGCGCCAACCCGATGTTGGCGCGCATGGCCAAGGGCAAGCCCAGGC
TGATGCTGCTGAACAAGCAGGACCTGGCCGATCCGGCCGTCACCGAGCAGTGGCTGGCCTGGTACCGCGCCAAGAAGCAG
ACCGAGGCGCTGGGCATGGACGCCGGCGAGCGCGCGCCGGCGCAGCGGCTGATCGCCGCCTGCCGCGCGCTCGCCCCCAA
CCGCGGCGGACTGGAAAAGCCGCTGCGGGTGCTGATCTGCGGCATTCCCAATGTCGGCAAGTCCACGCTGATCAACAGCA
TGTCCAGCCGCAAGATCGCCAAGACCGGCAATATGCCCGGCGTCACCAAGAACGAGCAGCGCATCATCCTGGCCGACGAC
TTCGAGCTCTACGACACCCCCGGCATGCTGTGGCCGAAGATCGAGGTGGAGGAGGGCGGCTACAATCTGGCCGCCAGCGG
CGCCGTCGGCCGCAACGCGATGGATGAGGAAGAGGTGGCGCTGGAGTTGCTGAAATACCTGCTGGTGCATTACCGCGCCG
AACTGGCCGCCCGCTACAAGCTGGATGAGGAGGAACTGGACGGCGCGCAGGACTGGCAGGCGCTGGAGCGGATAGGCAAG
CGGCGCGGCGCGGTGCTGTCCGGCGGCCGCATCAATATGCAGAAGGCGGCCGAGATCGTGCTGACCGATTTCCGCGACGG
CCAGACCGGCCGCATCACGCTGGAGCGCCCGGAAGAGTGGGCGAAGTGGGAGAAGCGCGCCAAGGAGATCGCCGCCCAGC
GCGCCGCCGAGCGCGAGGCGCGGGAGCAGGAAAAGGCCAGCCGCAAGGGCAGCCGCTGA

Upstream 100 bases:

>100_bases
CTTTCCGCCGGGCGAGATCGGCCGGCTGCTGCAACTGATGCAGGAACTCGACCACAACGGTCTGACTTATCTGCTGGACC
CGATTAGAAAGCGCTGAACA

Downstream 100 bases:

>100_bases
CCGCCGATTCGGTGCAGGCATGCCAAGCAGACAGGCCCGGATTTCCGGGCCTGTCGTCGTTTGATGGGGGGCGGAATAGC
TCCGGCCATGGCGTCGACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAIQWFPGHMNKARKDVSERLKDIDVVIEMLDARLPASSANPMLARMAKGKPRLMLLNKQDLADPAVTEQWLAWYRAKKQ
TEALGMDAGERAPAQRLIAACRALAPNRGGLEKPLRVLICGIPNVGKSTLINSMSSRKIAKTGNMPGVTKNEQRIILADD
FELYDTPGMLWPKIEVEEGGYNLAASGAVGRNAMDEEEVALELLKYLLVHYRAELAARYKLDEEELDGAQDWQALERIGK
RRGAVLSGGRINMQKAAEIVLTDFRDGQTGRITLERPEEWAKWEKRAKEIAAQRAAEREAREQEKASRKGSR

Sequences:

>Translated_312_residues
MAIQWFPGHMNKARKDVSERLKDIDVVIEMLDARLPASSANPMLARMAKGKPRLMLLNKQDLADPAVTEQWLAWYRAKKQ
TEALGMDAGERAPAQRLIAACRALAPNRGGLEKPLRVLICGIPNVGKSTLINSMSSRKIAKTGNMPGVTKNEQRIILADD
FELYDTPGMLWPKIEVEEGGYNLAASGAVGRNAMDEEEVALELLKYLLVHYRAELAARYKLDEEELDGAQDWQALERIGK
RRGAVLSGGRINMQKAAEIVLTDFRDGQTGRITLERPEEWAKWEKRAKEIAAQRAAEREAREQEKASRKGSR
>Mature_311_residues
AIQWFPGHMNKARKDVSERLKDIDVVIEMLDARLPASSANPMLARMAKGKPRLMLLNKQDLADPAVTEQWLAWYRAKKQT
EALGMDAGERAPAQRLIAACRALAPNRGGLEKPLRVLICGIPNVGKSTLINSMSSRKIAKTGNMPGVTKNEQRIILADDF
ELYDTPGMLWPKIEVEEGGYNLAASGAVGRNAMDEEEVALELLKYLLVHYRAELAARYKLDEEELDGAQDWQALERIGKR
RGAVLSGGRINMQKAAEIVLTDFRDGQTGRITLERPEEWAKWEKRAKEIAAQRAAEREAREQEKASRKGSR

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=292, Percent_Identity=31.1643835616438, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI7019419, Length=258, Percent_Identity=29.8449612403101, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI296317324, Length=279, Percent_Identity=27.2401433691756, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI9506611, Length=279, Percent_Identity=27.2401433691756, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI45643129, Length=169, Percent_Identity=28.9940828402367, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI45643127, Length=169, Percent_Identity=28.9940828402367, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI45593130, Length=169, Percent_Identity=28.9940828402367, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193211047, Length=221, Percent_Identity=29.8642533936652, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71990926, Length=219, Percent_Identity=26.4840182648402, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32563983, Length=219, Percent_Identity=26.4840182648402, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI32563985, Length=219, Percent_Identity=26.4840182648402, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320842, Length=299, Percent_Identity=27.7591973244147, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323744, Length=225, Percent_Identity=28.4444444444444, Blast_Score=72, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6324381, Length=250, Percent_Identity=26.8, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19922460, Length=263, Percent_Identity=29.6577946768061, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI28572990, Length=292, Percent_Identity=28.0821917808219, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 34931; Mature: 34799

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWFPGHMNKARKDVSERLKDIDVVIEMLDARLPASSANPMLARMAKGKPRLMLLNKQ
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCH
DLADPAVTEQWLAWYRAKKQTEALGMDAGERAPAQRLIAACRALAPNRGGLEKPLRVLIC
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHEEEEE
GIPNVGKSTLINSMSSRKIAKTGNMPGVTKNEQRIILADDFELYDTPGMLWPKIEVEEGG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEECCCCCCCCEEEECCCC
YNLAASGAVGRNAMDEEEVALELLKYLLVHYRAELAARYKLDEEELDGAQDWQALERIGK
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHH
RRGAVLSGGRINMQKAAEIVLTDFRDGQTGRITLERPEEWAKWEKRAKEIAAQRAAEREA
HCCCEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
REQEKASRKGSR
HHHHHHHHCCCC
>Mature Secondary Structure 
AIQWFPGHMNKARKDVSERLKDIDVVIEMLDARLPASSANPMLARMAKGKPRLMLLNKQ
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCH
DLADPAVTEQWLAWYRAKKQTEALGMDAGERAPAQRLIAACRALAPNRGGLEKPLRVLIC
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHEEEEE
GIPNVGKSTLINSMSSRKIAKTGNMPGVTKNEQRIILADDFELYDTPGMLWPKIEVEEGG
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEECCCCCCCCEEEECCCC
YNLAASGAVGRNAMDEEEVALELLKYLLVHYRAELAARYKLDEEELDGAQDWQALERIGK
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHH
RRGAVLSGGRINMQKAAEIVLTDFRDGQTGRITLERPEEWAKWEKRAKEIAAQRAAEREA
HCCCEECCCCCCHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
REQEKASRKGSR
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]