| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34499342
Identifier: 34499342
GI number: 34499342
Start: 4194515
End: 4195141
Strand: Reverse
Name: 34499342
Synonym: CV_3887
Alternate gene names: NA
Gene position: 4195141-4194515 (Counterclockwise)
Preceding gene: 34499343
Following gene: 34499341
Centisome position: 88.3
GC content: 65.71
Gene sequence:
>627_bases ATGCCGCGTCAACCATCGGTTCCCCGCGAGGCGATGCAGCAGGCGATCGAAACCCTGCGCGAAGCGGTGGGATCGGCGCG CGATGGGTTGCCGGAAGAGGTGTTCCTGTTCGTCAGCAGCCTGACGCCCATGGTCAACGTCGACCTGCTGATCCGCGACG AGGAAGGGCGCACGCTGCTGACCTGGCGGCACGACCGTTTCTACGGTCCGGGCTGGCATATTCCCGGCGGCATCATACGC TTCAAGGAGAGTTCGGCCGAGCGCATCGCCGCGGTGGCGGCCAAGGAGCTCGGCGCCGAGGTCGGCTTCGACCCGCGCCC GCTGTGCCAGCACGAGATCGTCAACCACAGCCGCGACGTCCGCGGGCATTTCATTTCGCTGCTGCACGCATGCCGGCTGC TGACGCCGCCGGACGAGGCGAGACGCTTCGACCCGTCGGCGCCGCGCGACGGCGACTGGGCCTGGCATCAGGGCTGCCCG GACGATCTGATCCGGGTGCACGAGATCTACCGCGCCTTCATCGATGGCGCGGAAGCCGGCAGTCCGCTTCCTTCGGCTCA AGTTTCGCTGGGAAAAGCCGAAAATCATATAAGAAATGCTGATACAGAAAACCAGGCGGCGCGCTAA
Upstream 100 bases:
>100_bases CGGAAGTGGTGCGGCAGATCCGCGCCCGCCACGGCGAGCGCTTCGCTATCGCCGTGCTGGACGGCGATGCGCTGCGAACC CCGGCTCCGGAGGCCTGACC
Downstream 100 bases:
>100_bases TCCGGCACGGCCTCTCTGATACACTCGAAATACTTGCAAAGCCCTGCCGGCGCGCGTGCGGACGGCGGGGATGGAAAGAC CTGGAGATACCCACATGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NUDIX Domain-Containing Protein
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MPRQPSVPREAMQQAIETLREAVGSARDGLPEEVFLFVSSLTPMVNVDLLIRDEEGRTLLTWRHDRFYGPGWHIPGGIIR FKESSAERIAAVAAKELGAEVGFDPRPLCQHEIVNHSRDVRGHFISLLHACRLLTPPDEARRFDPSAPRDGDWAWHQGCP DDLIRVHEIYRAFIDGAEAGSPLPSAQVSLGKAENHIRNADTENQAAR
Sequences:
>Translated_208_residues MPRQPSVPREAMQQAIETLREAVGSARDGLPEEVFLFVSSLTPMVNVDLLIRDEEGRTLLTWRHDRFYGPGWHIPGGIIR FKESSAERIAAVAAKELGAEVGFDPRPLCQHEIVNHSRDVRGHFISLLHACRLLTPPDEARRFDPSAPRDGDWAWHQGCP DDLIRVHEIYRAFIDGAEAGSPLPSAQVSLGKAENHIRNADTENQAAR >Mature_207_residues PRQPSVPREAMQQAIETLREAVGSARDGLPEEVFLFVSSLTPMVNVDLLIRDEEGRTLLTWRHDRFYGPGWHIPGGIIRF KESSAERIAAVAAKELGAEVGFDPRPLCQHEIVNHSRDVRGHFISLLHACRLLTPPDEARRFDPSAPRDGDWAWHQGCPD DLIRVHEIYRAFIDGAEAGSPLPSAQVSLGKAENHIRNADTENQAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23238; Mature: 23107
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRQPSVPREAMQQAIETLREAVGSARDGLPEEVFLFVSSLTPMVNVDLLIRDEEGRTLL CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEE TWRHDRFYGPGWHIPGGIIRFKESSAERIAAVAAKELGAEVGFDPRPLCQHEIVNHSRDV EEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHH RGHFISLLHACRLLTPPDEARRFDPSAPRDGDWAWHQGCPDDLIRVHEIYRAFIDGAEAG HHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC SPLPSAQVSLGKAENHIRNADTENQAAR CCCCCHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PRQPSVPREAMQQAIETLREAVGSARDGLPEEVFLFVSSLTPMVNVDLLIRDEEGRTLL CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEE TWRHDRFYGPGWHIPGGIIRFKESSAERIAAVAAKELGAEVGFDPRPLCQHEIVNHSRDV EEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHH RGHFISLLHACRLLTPPDEARRFDPSAPRDGDWAWHQGCPDDLIRVHEIYRAFIDGAEAG HHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC SPLPSAQVSLGKAENHIRNADTENQAAR CCCCCHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA