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The map label for this gene is fliD [H]

Identifier: 34499331

GI number: 34499331

Start: 4177765

End: 4179135

Strand: Reverse

Name: fliD [H]

Synonym: CV_3876

Alternate gene names: 34499331

Gene position: 4179135-4177765 (Counterclockwise)

Preceding gene: 34499332

Following gene: 34499330

Centisome position: 87.96

GC content: 61.71

Gene sequence:

>1371_bases
ATGGCAGCCATTACCAGTTCCGTGGGTGCATTGGATGTACAAGGCATAGTCAGTCAGTTGATGGCGATAGAGCGCAGGCC
GCTCAACGAAAGCCAGCAACGCGCCGACCAATACAACACCCAGCTCAGCACCGTAGGCAAGCTCAGTTCTTCGCTGTCCG
CGCTTCAAACCGCGTTGACAGGGCTTTCCTCCGGCCGTTTCCTGCAGGTGTTCAAGGCCACGGTCAGCGACGCGTCGATG
GGCGCCGTGTCCACCACCAGCGGCGGCAGCTCCGGCACTTACCAGATCGATGTGAAGAATCTGGCCACCAGCCGCCAGCT
GGTGTTCGATCAGGTCGGCACCAGCACGATCACCGATCCCAAGGCGGCCATCAGCGGCGCGCCGGACTCGATCTCCTTTC
AAGTCAATGGCAAGACCCAGACGGTGACGCTGCGCAGCAAGCCGGACGACGTGGTTTCGCTGCAGACCATCAACGACAAG
ATCAATGCGGCCGGCATCGGCATCAACGCTTCCGTGGTCCAGAACGGCTCGCAGTACAAGCTGGTGTTGGGCTCGGTGGA
ATCCGGTCTCGACAATCAATTCAAGATCGTCGCCGGAAGCAATAGCAGCGACTCGGGCGGCACCAGCGGCTCCACGCTGG
CGGGCCTGTCGCAGAGCCCCACCGCGGGAACGGAGTCGCGGGATGCCAGCAATGCCAGCCTGACCGTCAACGGCGTCGCC
ATCAGCGCCGGCAGCAACAAGGTGACCAGCGCGGTGGCCGGCGTGGAGATAGATCTCTACAAGGCGGGCAGCTTCACGGT
GTCGCTGTCGCCGGACAGCGCCGGCGTGGCCAAGAATCTGCAGTCTTTCGTCGACGCGTACAACCAGGTGATAGGCGACG
TCAAGGCCGCGCGCAGCGGCGCCCTGAAGGGCAACGCGTCTATCCTGGACATCCAGGGCAAGCTGCAGCAGGTCCTGGCC
ACCCCGGTGGCCGGCGTCGATCCGGTGAATTCCATCGCTTATCTATCGCAGGCCGGCATCTCTCTGCAGAAGGACGGCAC
GCTGAAGCTGGACCAGACCGCCTTCAACGACGCGATGAAGAAGGACAAGCAGGCCGTGGTCAATCTGTTCGGCAACGCCT
CGAATACCGGTTTTGCCCAGCGCTTCAACCTCGAGATCAACGGCATGCTGGATCCCAAGGGCGTGATCGAGACCAGCAAG
GCCACGATACGCACCAAGGTGAGCACGGAAACCCAGCTGCAAAGTTCCCTGCAGTCGCGCCTGGACACCAAGCAGGCGCA
GCTGATCAGGCAGTACACGGCATTGAACAAGACCCTGGCCGAGATGCAGTCCGGCTCGTCCAGTCTGTTCAATCTGATTT
CCAGCAAGTAA

Upstream 100 bases:

>100_bases
AGCGTTGCGCATCGCCAAGGCGATCGGCGACTTCAAGGGACTTTTGCTGAAGGACAAGGCCTGACCTCTTTGTCCCGATG
CGGCTAAACATGGGGATGAC

Downstream 100 bases:

>100_bases
AGTGGCGGACCGGATGGCATGGCGCTGTCCGGTTTCAGTTCTAGAAATGATGGTGGGCCATGCTGAATTCACGAATGCTC
AAGCAGTTCAACCAGGCATA

Product: flagellar protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MAAITSSVGALDVQGIVSQLMAIERRPLNESQQRADQYNTQLSTVGKLSSSLSALQTALTGLSSGRFLQVFKATVSDASM
GAVSTTSGGSSGTYQIDVKNLATSRQLVFDQVGTSTITDPKAAISGAPDSISFQVNGKTQTVTLRSKPDDVVSLQTINDK
INAAGIGINASVVQNGSQYKLVLGSVESGLDNQFKIVAGSNSSDSGGTSGSTLAGLSQSPTAGTESRDASNASLTVNGVA
ISAGSNKVTSAVAGVEIDLYKAGSFTVSLSPDSAGVAKNLQSFVDAYNQVIGDVKAARSGALKGNASILDIQGKLQQVLA
TPVAGVDPVNSIAYLSQAGISLQKDGTLKLDQTAFNDAMKKDKQAVVNLFGNASNTGFAQRFNLEINGMLDPKGVIETSK
ATIRTKVSTETQLQSSLQSRLDTKQAQLIRQYTALNKTLAEMQSGSSSLFNLISSK

Sequences:

>Translated_456_residues
MAAITSSVGALDVQGIVSQLMAIERRPLNESQQRADQYNTQLSTVGKLSSSLSALQTALTGLSSGRFLQVFKATVSDASM
GAVSTTSGGSSGTYQIDVKNLATSRQLVFDQVGTSTITDPKAAISGAPDSISFQVNGKTQTVTLRSKPDDVVSLQTINDK
INAAGIGINASVVQNGSQYKLVLGSVESGLDNQFKIVAGSNSSDSGGTSGSTLAGLSQSPTAGTESRDASNASLTVNGVA
ISAGSNKVTSAVAGVEIDLYKAGSFTVSLSPDSAGVAKNLQSFVDAYNQVIGDVKAARSGALKGNASILDIQGKLQQVLA
TPVAGVDPVNSIAYLSQAGISLQKDGTLKLDQTAFNDAMKKDKQAVVNLFGNASNTGFAQRFNLEINGMLDPKGVIETSK
ATIRTKVSTETQLQSSLQSRLDTKQAQLIRQYTALNKTLAEMQSGSSSLFNLISSK
>Mature_455_residues
AAITSSVGALDVQGIVSQLMAIERRPLNESQQRADQYNTQLSTVGKLSSSLSALQTALTGLSSGRFLQVFKATVSDASMG
AVSTTSGGSSGTYQIDVKNLATSRQLVFDQVGTSTITDPKAAISGAPDSISFQVNGKTQTVTLRSKPDDVVSLQTINDKI
NAAGIGINASVVQNGSQYKLVLGSVESGLDNQFKIVAGSNSSDSGGTSGSTLAGLSQSPTAGTESRDASNASLTVNGVAI
SAGSNKVTSAVAGVEIDLYKAGSFTVSLSPDSAGVAKNLQSFVDAYNQVIGDVKAARSGALKGNASILDIQGKLQQVLAT
PVAGVDPVNSIAYLSQAGISLQKDGTLKLDQTAFNDAMKKDKQAVVNLFGNASNTGFAQRFNLEINGMLDPKGVIETSKA
TIRTKVSTETQLQSSLQSRLDTKQAQLIRQYTALNKTLAEMQSGSSSLFNLISSK

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=473, Percent_Identity=28.1183932346723, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 47143; Mature: 47012

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAITSSVGALDVQGIVSQLMAIERRPLNESQQRADQYNTQLSTVGKLSSSLSALQTALT
CCCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSSGRFLQVFKATVSDASMGAVSTTSGGSSGTYQIDVKNLATSRQLVFDQVGTSTITDP
HCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCC
KAAISGAPDSISFQVNGKTQTVTLRSKPDDVVSLQTINDKINAAGIGINASVVQNGSQYK
HHHHCCCCCCEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEECCCCHHHHCCCCCEE
LVLGSVESGLDNQFKIVAGSNSSDSGGTSGSTLAGLSQSPTAGTESRDASNASLTVNGVA
EEEECHHCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEE
ISAGSNKVTSAVAGVEIDLYKAGSFTVSLSPDSAGVAKNLQSFVDAYNQVIGDVKAARSG
EECCCCHHHHHHCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ALKGNASILDIQGKLQQVLATPVAGVDPVNSIAYLSQAGISLQKDGTLKLDQTAFNDAMK
CCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCEEECHHHHHHHHH
KDKQAVVNLFGNASNTGFAQRFNLEINGMLDPKGVIETSKATIRTKVSTETQLQSSLQSR
HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHH
LDTKQAQLIRQYTALNKTLAEMQSGSSSLFNLISSK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
AAITSSVGALDVQGIVSQLMAIERRPLNESQQRADQYNTQLSTVGKLSSSLSALQTALT
CCCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLSSGRFLQVFKATVSDASMGAVSTTSGGSSGTYQIDVKNLATSRQLVFDQVGTSTITDP
HCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEHHHHCCHHHHHHHHCCCCCCCCC
KAAISGAPDSISFQVNGKTQTVTLRSKPDDVVSLQTINDKINAAGIGINASVVQNGSQYK
HHHHCCCCCCEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEECCCCHHHHCCCCCEE
LVLGSVESGLDNQFKIVAGSNSSDSGGTSGSTLAGLSQSPTAGTESRDASNASLTVNGVA
EEEECHHCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEE
ISAGSNKVTSAVAGVEIDLYKAGSFTVSLSPDSAGVAKNLQSFVDAYNQVIGDVKAARSG
EECCCCHHHHHHCCEEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
ALKGNASILDIQGKLQQVLATPVAGVDPVNSIAYLSQAGISLQKDGTLKLDQTAFNDAMK
CCCCCCEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCEEECHHHHHHHHH
KDKQAVVNLFGNASNTGFAQRFNLEINGMLDPKGVIETSKATIRTKVSTETQLQSSLQSR
HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEECCCCEEEEECCHHHHHHHHHHHH
LDTKQAQLIRQYTALNKTLAEMQSGSSSLFNLISSK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10678962; 10984043 [H]