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The map label for this gene is ihfA [H]

Identifier: 34499324

GI number: 34499324

Start: 4173849

End: 4174118

Strand: Direct

Name: ihfA [H]

Synonym: CV_3869

Alternate gene names: 34499324

Gene position: 4173849-4174118 (Clockwise)

Preceding gene: 34499321

Following gene: 34499337

Centisome position: 87.85

GC content: 62.59

Gene sequence:

>270_bases
ATGACCAAAGCCGAACTGATTGCCCTCCTCTCCGACAAGTCCGGCCTGACCAAGGCTGACGTGCTGCGCGTCCTCGGCGC
CTTCGACGAAGTGCTGCTGGACACCCTGGCCGACAACGGCGAGATCAGCATCGTGGCCGGCAAGTTCAAGGTGAAGGAAA
CTGCCGCCCGCACCGGCCGCAATCCGAAAACCGGCGAAACCATCCAGATCGCCGCCAAGCGCAAGGTCTCCTTCGTGGCC
AGCAAGCAGCTGAAAGACCGCATCGCCTGA

Upstream 100 bases:

>100_bases
ATAGAGCGGGCTTTTACAAGCCAGACATGCTTTTTTACCTTTATTCGCGGCGTAAAATCGCAGAAAATGGGGTTTTACTC
CTCTCGAAAGATTCATCGCC

Downstream 100 bases:

>100_bases
TGCGCGCATGAGCCGAACATGAAAAAGGGCCGCGATTCCGCGGCCCTTTTGCTTGGATGTCCTGACGTCAGTTCTGCTGC
CAGATCAACCTGGCGATAGC

Product: DNA-binding protein HU-beta

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MTKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVAGKFKVKETAARTGRNPKTGETIQIAAKRKVSFVA
SKQLKDRIA

Sequences:

>Translated_89_residues
MTKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVAGKFKVKETAARTGRNPKTGETIQIAAKRKVSFVA
SKQLKDRIA
>Mature_88_residues
TKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVAGKFKVKETAARTGRNPKTGETIQIAAKRKVSFVAS
KQLKDRIA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=38.2022471910112, Blast_Score=62, Evalue=5e-12,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=41.5730337078652, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 9542; Mature: 9411

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVAGKFKVKETAARTGR
CCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEHHHHHHHCCC
NPKTGETIQIAAKRKVSFVASKQLKDRIA
CCCCCCEEEEEHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKAELIALLSDKSGLTKADVLRVLGAFDEVLLDTLADNGEISIVAGKFKVKETAARTGR
CHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEHHHHHHHCCC
NPKTGETIQIAAKRKVSFVASKQLKDRIA
CCCCCCEEEEEHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA