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The map label for this gene is ycfH [C]

Identifier: 34499175

GI number: 34499175

Start: 4019276

End: 4020046

Strand: Reverse

Name: ycfH [C]

Synonym: CV_3720

Alternate gene names: 34499175

Gene position: 4020046-4019276 (Counterclockwise)

Preceding gene: 34499176

Following gene: 34499174

Centisome position: 84.61

GC content: 66.28

Gene sequence:

>771_bases
ATGTTGATCGACTCCCACTGCCACATCAATTTTCCCGACCTCGCCGAGCGCATGCCCGACGTGCTGGCCAATATGCGCCA
GAACCAGGTGACGCACGCCTTGGTGATCGGCGTCAGCCGTCCCAAATATCCGCAGGTGCTGGCGCTGGCCGAAGCGCATC
CCAATCTGTACGCCACGGTCGGCGTGCATCCGGACGACCCGGAAGCCGAGGAGTACAGCGAGGACGAGCTGGTGGCGCTG
GCGGGCCATCCGCGCGTGGTGGGCATAGGCGAGACCGGCCTCGACTACCACTGGTGCAAGGGCGAGCTCGATTGGCAGCA
TCAGCGCTTCCGCACCCATATCCGCGCCGCCAGGCGCGTCGGCCTGCCGCTGGTGATCCACACCCGCGAGTCCGCCGAGG
ACACCATCCGCATCATGCGGGAAGAGCATGCCGAGCAATGCGGCGGCGTGATGCACTGTTTCACCGAGACCTGGGAGGTG
GCCGAGGCCGCGCTGGCGCTGGGCTTCTACATCTCCTTCTCCGGCGTGGTGACCTTCAAGAACGCCAGGCAGGTGCAGGA
AGTGGCGCAGAAGGTGCCGCTGGAGCGCATGCTGATCGAGACCGATTCGCCCTATCTCGCGCCGGTGCCGTTCCGCGGCA
AGACCAACGAGCCGGCCTATGTGCGCCACGTGGCGGAGTTCATCGCCGGGCTGCGCGGCATCCCGTTCGAAGAGGTGGCG
CAGGCCACCACCGACAATTTCTTCCGCCTGTTCGCCAAGGCGGCCCGCTGA

Upstream 100 bases:

>100_bases
GGCGTGCTCAATTCCAGCCGCCCCACCCATACCATGTGAGGTACGGGGGGCGGACGTGATATCCTGTGGGCCGGATTCAC
GTTTTATCTGCCCACCGACC

Downstream 100 bases:

>100_bases
AACGGAGGGCATCATGCGGCTGTCCGCATTGGGCTGGATCGGCTGGCTGATGGCGCTGCCGGCGCTGGCTAATTGCGTCA
GCCTGGGCGGCCGCAGCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLIDSHCHINFPDLAERMPDVLANMRQNQVTHALVIGVSRPKYPQVLALAEAHPNLYATVGVHPDDPEAEEYSEDELVAL
AGHPRVVGIGETGLDYHWCKGELDWQHQRFRTHIRAARRVGLPLVIHTRESAEDTIRIMREEHAEQCGGVMHCFTETWEV
AEAALALGFYISFSGVVTFKNARQVQEVAQKVPLERMLIETDSPYLAPVPFRGKTNEPAYVRHVAEFIAGLRGIPFEEVA
QATTDNFFRLFAKAAR

Sequences:

>Translated_256_residues
MLIDSHCHINFPDLAERMPDVLANMRQNQVTHALVIGVSRPKYPQVLALAEAHPNLYATVGVHPDDPEAEEYSEDELVAL
AGHPRVVGIGETGLDYHWCKGELDWQHQRFRTHIRAARRVGLPLVIHTRESAEDTIRIMREEHAEQCGGVMHCFTETWEV
AEAALALGFYISFSGVVTFKNARQVQEVAQKVPLERMLIETDSPYLAPVPFRGKTNEPAYVRHVAEFIAGLRGIPFEEVA
QATTDNFFRLFAKAAR
>Mature_256_residues
MLIDSHCHINFPDLAERMPDVLANMRQNQVTHALVIGVSRPKYPQVLALAEAHPNLYATVGVHPDDPEAEEYSEDELVAL
AGHPRVVGIGETGLDYHWCKGELDWQHQRFRTHIRAARRVGLPLVIHTRESAEDTIRIMREEHAEQCGGVMHCFTETWEV
AEAALALGFYISFSGVVTFKNARQVQEVAQKVPLERMLIETDSPYLAPVPFRGKTNEPAYVRHVAEFIAGLRGIPFEEVA
QATTDNFFRLFAKAAR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI226061614, Length=255, Percent_Identity=29.4117647058824, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=29.6992481203008, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=29.3233082706767, Blast_Score=107, Evalue=8e-24,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=29.4117647058824, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI225903424, Length=206, Percent_Identity=32.0388349514563, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI14042943, Length=268, Percent_Identity=27.2388059701493, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI225903439, Length=250, Percent_Identity=28, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI226061595, Length=227, Percent_Identity=27.3127753303965, Blast_Score=81, Evalue=1e-15,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=47.0817120622568, Blast_Score=237, Evalue=5e-64,
Organism=Escherichia coli, GI87082439, Length=253, Percent_Identity=32.0158102766798, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=30.5019305019305, Blast_Score=122, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17559024, Length=280, Percent_Identity=29.6428571428571, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17565396, Length=304, Percent_Identity=28.6184210526316, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=26.0536398467433, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17543026, Length=294, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24586117, Length=274, Percent_Identity=31.7518248175182, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI221330018, Length=274, Percent_Identity=31.7518248175182, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24648690, Length=283, Percent_Identity=27.9151943462898, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28848; Mature: 28848

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDSHCHINFPDLAERMPDVLANMRQNQVTHALVIGVSRPKYPQVLALAEAHPNLYATV
CEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCCEEEEE
GVHPDDPEAEEYSEDELVALAGHPRVVGIGETGLDYHWCKGELDWQHQRFRTHIRAARRV
ECCCCCCCHHHCCCCCEEEEECCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHC
GLPLVIHTRESAEDTIRIMREEHAEQCGGVMHCFTETWEVAEAALALGFYISFSGVVTFK
CCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCEEEEH
NARQVQEVAQKVPLERMLIETDSPYLAPVPFRGKTNEPAYVRHVAEFIAGLRGIPFEEVA
HHHHHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
QATTDNFFRLFAKAAR
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIDSHCHINFPDLAERMPDVLANMRQNQVTHALVIGVSRPKYPQVLALAEAHPNLYATV
CEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCCEEEEE
GVHPDDPEAEEYSEDELVALAGHPRVVGIGETGLDYHWCKGELDWQHQRFRTHIRAARRV
ECCCCCCCHHHCCCCCEEEEECCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHC
GLPLVIHTRESAEDTIRIMREEHAEQCGGVMHCFTETWEVAEAALALGFYISFSGVVTFK
CCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCEEEEH
NARQVQEVAQKVPLERMLIETDSPYLAPVPFRGKTNEPAYVRHVAEFIAGLRGIPFEEVA
HHHHHHHHHHHCCHHHEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
QATTDNFFRLFAKAAR
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]