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The map label for this gene is deoB

Identifier: 34499154

GI number: 34499154

Start: 3997540

End: 3998757

Strand: Reverse

Name: deoB

Synonym: CV_3699

Alternate gene names: 34499154

Gene position: 3998757-3997540 (Counterclockwise)

Preceding gene: 34499155

Following gene: 34499153

Centisome position: 84.17

GC content: 67.41

Gene sequence:

>1218_bases
ATGAAACGCGCAATCATTCTGATACTGGACTCGCTGGGCATAGGCGCGGCGGCTGACGCGCCGAAGTTCGGCGACGCCGG
CAGCAACACTTTGGGCCACATCGCGATGGAGGCGGCCGCCGGCCGCGCCGACATCGGCCGCAGCGGTCCGCTGAAGCTGC
CCAATCTATCCCGGATGGGCCTGGGCCATGCTTGCCAGCTGTCGTCCGGCTACTTCCCGGAAGGGATGGATCCGGCCGCG
CCGGCAGCCGCCTACGGCTACGCCCGCGAGATTTCCAGCGGCAAGGACACGCCGTCCGGCCATTGGGAAATCGCCGGCGT
GCCGGTGCTGTTCGACTGGGGCTATTTCTCGGACCACGACAACAGCTTCCCGCAGCAACTGCTGGACGCCATTGTCGACA
AGGCCGGACTGCCAGGCTATCTGGGCAACTGCCACGCCTCCGGCACCGAGATACTGGACCGGCTGGGCGAGGAGCACATG
AAGACCGGCAAGCCGATCTTCTACACCTCGGCCGATTCGGTGTTCCAGATCGCCTGCCACGAAGAGACCTACGGCCTCGA
GCGGCTGTACGAGCTGTGCAAGATCACCCGCGAGCTGCTGGAGCCGTACAACATCGGCCGCGTGATCGCCCGGCCCTTCG
TCGGCGAAGGCAAGGGCAAGTTCGCCCGCACCGGAAACCGCAAGGACCTGGCGGTGGAGCCGCCGGCGGCCACGGTGCTG
AAGAAGCTGGCCGACGCCGGCGGCGACGTGGTGTCGATCGGCAAGATCGCCGACATCTACGCCCACGTCGGCATCACCCA
CAAGCACAAGGCCACCGGCTTCGACCAGCTGTGGGACGCCACGCTGACCGCGATGGACCAGCATCGGGACAAGCCGGCCA
TCATCATGGCCAACTTCGTCGATTTCGACTCCAGCTACGGCCACCGCCGCAACACCGCCGGCTACGCCGCGGCGCTGGAG
GAGTTCGACGCGCGCCTGCCCGAGGTGATGGCGGCGCTGGGCGACGACGACATCCTGATCCTGTCGGCCGACCATGGCTG
CGATCCGACCTGGCCGGGCACCGACCACACCCGCGAGCACATCCCGGTGCTGTGCTACGGCAAGCAGGTCAAGGCCGGCC
CGATAGGCGAGCGCGCCACCTTCGCCGACATCGGCCAGAGCGTGGCCGCCCACCTGGGCCTGCCCAGGATGGACTACGGC
ACGTCCTTCCTGGACTGA

Upstream 100 bases:

>100_bases
GCGCCGCGTCAAGGCCGCCATCCGCATCGACGAAGCCGCGCCGTCCGAGCTGCCGCTGGTCTACCAGATCATCCGCGGAG
AATAAGGCCGGGGAGGCATC

Downstream 100 bases:

>100_bases
GGCCGCCACCCCGGGCCGCCGCGCGCGGCCCGGCGTCGTTTTTCCCCGCTTGCGCAAGCGCAGCGGGAGCAGAATCATTT
AGAGGAGACCTTGAATGGCA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKRAIILILDSLGIGAAADAPKFGDAGSNTLGHIAMEAAAGRADIGRSGPLKLPNLSRMGLGHACQLSSGYFPEGMDPAA
PAAAYGYAREISSGKDTPSGHWEIAGVPVLFDWGYFSDHDNSFPQQLLDAIVDKAGLPGYLGNCHASGTEILDRLGEEHM
KTGKPIFYTSADSVFQIACHEETYGLERLYELCKITRELLEPYNIGRVIARPFVGEGKGKFARTGNRKDLAVEPPAATVL
KKLADAGGDVVSIGKIADIYAHVGITHKHKATGFDQLWDATLTAMDQHRDKPAIIMANFVDFDSSYGHRRNTAGYAAALE
EFDARLPEVMAALGDDDILILSADHGCDPTWPGTDHTREHIPVLCYGKQVKAGPIGERATFADIGQSVAAHLGLPRMDYG
TSFLD

Sequences:

>Translated_405_residues
MKRAIILILDSLGIGAAADAPKFGDAGSNTLGHIAMEAAAGRADIGRSGPLKLPNLSRMGLGHACQLSSGYFPEGMDPAA
PAAAYGYAREISSGKDTPSGHWEIAGVPVLFDWGYFSDHDNSFPQQLLDAIVDKAGLPGYLGNCHASGTEILDRLGEEHM
KTGKPIFYTSADSVFQIACHEETYGLERLYELCKITRELLEPYNIGRVIARPFVGEGKGKFARTGNRKDLAVEPPAATVL
KKLADAGGDVVSIGKIADIYAHVGITHKHKATGFDQLWDATLTAMDQHRDKPAIIMANFVDFDSSYGHRRNTAGYAAALE
EFDARLPEVMAALGDDDILILSADHGCDPTWPGTDHTREHIPVLCYGKQVKAGPIGERATFADIGQSVAAHLGLPRMDYG
TSFLD
>Mature_405_residues
MKRAIILILDSLGIGAAADAPKFGDAGSNTLGHIAMEAAAGRADIGRSGPLKLPNLSRMGLGHACQLSSGYFPEGMDPAA
PAAAYGYAREISSGKDTPSGHWEIAGVPVLFDWGYFSDHDNSFPQQLLDAIVDKAGLPGYLGNCHASGTEILDRLGEEHM
KTGKPIFYTSADSVFQIACHEETYGLERLYELCKITRELLEPYNIGRVIARPFVGEGKGKFARTGNRKDLAVEPPAATVL
KKLADAGGDVVSIGKIADIYAHVGITHKHKATGFDQLWDATLTAMDQHRDKPAIIMANFVDFDSSYGHRRNTAGYAAALE
EFDARLPEVMAALGDDDILILSADHGCDPTWPGTDHTREHIPVLCYGKQVKAGPIGERATFADIGQSVAAHLGLPRMDYG
TSFLD

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=408, Percent_Identity=68.3823529411765, Blast_Score=567, Evalue=1e-163,
Organism=Escherichia coli, GI1789781, Length=435, Percent_Identity=27.816091954023, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_CHRVO (Q7NRT1)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903369.1
- ProteinModelPortal:   Q7NRT1
- SMR:   Q7NRT1
- GeneID:   2548211
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3699
- NMPDR:   fig|243365.1.peg.3699
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- PhylomeDB:   Q7NRT1
- ProtClustDB:   PRK05362
- BioCyc:   CVIO243365:CV_3699-MONOMER
- BRENDA:   5.4.2.7
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 43450; Mature: 43450

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAIILILDSLGIGAAADAPKFGDAGSNTLGHIAMEAAAGRADIGRSGPLKLPNLSRMG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC
LGHACQLSSGYFPEGMDPAAPAAAYGYAREISSGKDTPSGHWEIAGVPVLFDWGYFSDHD
CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCC
NSFPQQLLDAIVDKAGLPGYLGNCHASGTEILDRLGEEHMKTGKPIFYTSADSVFQIACH
CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEC
EETYGLERLYELCKITRELLEPYNIGRVIARPFVGEGKGKFARTGNRKDLAVEPPAATVL
CHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEECCCCCCCEEECCCHHHHH
KKLADAGGDVVSIGKIADIYAHVGITHKHKATGFDQLWDATLTAMDQHRDKPAIIMANFV
HHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSSYGHRRNTAGYAAALEEFDARLPEVMAALGDDDILILSADHGCDPTWPGTDHTREH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHC
IPVLCYGKQVKAGPIGERATFADIGQSVAAHLGLPRMDYGTSFLD
CCEEEECCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKRAIILILDSLGIGAAADAPKFGDAGSNTLGHIAMEAAAGRADIGRSGPLKLPNLSRMG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCC
LGHACQLSSGYFPEGMDPAAPAAAYGYAREISSGKDTPSGHWEIAGVPVLFDWGYFSDHD
CCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCC
NSFPQQLLDAIVDKAGLPGYLGNCHASGTEILDRLGEEHMKTGKPIFYTSADSVFQIACH
CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEC
EETYGLERLYELCKITRELLEPYNIGRVIARPFVGEGKGKFARTGNRKDLAVEPPAATVL
CHHCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEECCCCCCCEEECCCHHHHH
KKLADAGGDVVSIGKIADIYAHVGITHKHKATGFDQLWDATLTAMDQHRDKPAIIMANFV
HHHHHCCCCEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
DFDSSYGHRRNTAGYAAALEEFDARLPEVMAALGDDDILILSADHGCDPTWPGTDHTREH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHC
IPVLCYGKQVKAGPIGERATFADIGQSVAAHLGLPRMDYGTSFLD
CCEEEECCEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14500782