| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34499139
Identifier: 34499139
GI number: 34499139
Start: 3986011
End: 3986955
Strand: Reverse
Name: 34499139
Synonym: CV_3684
Alternate gene names: NA
Gene position: 3986955-3986011 (Counterclockwise)
Preceding gene: 34499140
Following gene: 34499138
Centisome position: 83.92
GC content: 72.06
Gene sequence:
>945_bases ATGTCGCCATTCCGTGAGCGCCTGCGGCGCTGGTGGCGGGCACGCCTGCCGCTGGAGGACCGTTGCGAGCTGTCGCAGCG CCGCATCTACCTGCTTCCCACCCGTTTCGGCTTGCTGCTGATGGCGGTGGCGCTGGCGGTCTGGCTGGGCGCGCTCAATT ATCAGGTCAGCCTGGCTTACGCGCTGGCGTTCTGGATCGCCGGCCTGTTGCTGGTGGCGGTGCTGATGGCCTATCGGCAG CTGGCCGGGTTGAGGCTGAGCGCCGACGGCGGTCCTGCGGTATTCGCCGGCGAGACGGCGGTGTTTTCCCTGTTGCTCGA GAACCGGATGCCGGCCGCCAGGCGCTTGCGCGTCGCCGTCGACGGCGGCGAGCCGCGCGCGTGCGAGTTGGATGCCATGA GCGACGGCCGGGTGGCGTTGGCAGTGGTCGCCGCCAGGCGCGGCTGGACGCCGCTGCCGGCCTGCGTTGTCGACAGCGAT GCGCCGTTCGGCCTGGTGCGCGCCTGGGCCGTGCTGAAGCTGCGCGCGCGGGTGCTGGCCTATCCGGCGCCGCTGCCCGA CGCGGCAAGGGGACGGCATGACACGGAAACGGGGAGAGGGGGCGGCGAGCGCGCCGGCGACGAGGATTTTTCCCATCTGG ATGCCTACCGTTACGGCGATGCGCCGCGGCAGATCGCCTGGAAGGTGATGGCGCGGCGCGACCTGTTGGCCAGCAAGCGC TTTTCCGCCGAGGCCGGCGCGCCGCTGCTGCGCCTGGGCTGGGACGATTACATCGGCGAATCCGATCCAGAGCGGCGCTT GTCGCGGCTGGCCTGGCGGGTGGAGCAGTGCGAGCGCCGGCGCCTGCGCTACCGGCTGTGCCTGCCGGATGGCGAGATCG GTCCGCAGCCCGGGCAGCGCGAACGGGCGCTCGGCGCGCTGGCGCTGTTCGGGAGCGCGCCGTGA
Upstream 100 bases:
>100_bases CCCGAGGACGTGAAGGCGATTTTCGCGCCGGTGGCCGCCCACCGGCTGCAATCGGCGTCCGGCGCGCCGGTCGAGCGGGA ACTGGACAGGCTGCTCGCCC
Downstream 100 bases:
>100_bases CGGCGATGGATGCGCGGGACGAAGGCCGCTGGCCGACGCTGCTGGCGCTGCTGTGGGCAATGCTGCCGCTGGCTTGGCAT CTGCCGCCATGGCTGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MSPFRERLRRWWRARLPLEDRCELSQRRIYLLPTRFGLLLMAVALAVWLGALNYQVSLAYALAFWIAGLLLVAVLMAYRQ LAGLRLSADGGPAVFAGETAVFSLLLENRMPAARRLRVAVDGGEPRACELDAMSDGRVALAVVAARRGWTPLPACVVDSD APFGLVRAWAVLKLRARVLAYPAPLPDAARGRHDTETGRGGGERAGDEDFSHLDAYRYGDAPRQIAWKVMARRDLLASKR FSAEAGAPLLRLGWDDYIGESDPERRLSRLAWRVEQCERRRLRYRLCLPDGEIGPQPGQRERALGALALFGSAP
Sequences:
>Translated_314_residues MSPFRERLRRWWRARLPLEDRCELSQRRIYLLPTRFGLLLMAVALAVWLGALNYQVSLAYALAFWIAGLLLVAVLMAYRQ LAGLRLSADGGPAVFAGETAVFSLLLENRMPAARRLRVAVDGGEPRACELDAMSDGRVALAVVAARRGWTPLPACVVDSD APFGLVRAWAVLKLRARVLAYPAPLPDAARGRHDTETGRGGGERAGDEDFSHLDAYRYGDAPRQIAWKVMARRDLLASKR FSAEAGAPLLRLGWDDYIGESDPERRLSRLAWRVEQCERRRLRYRLCLPDGEIGPQPGQRERALGALALFGSAP >Mature_313_residues SPFRERLRRWWRARLPLEDRCELSQRRIYLLPTRFGLLLMAVALAVWLGALNYQVSLAYALAFWIAGLLLVAVLMAYRQL AGLRLSADGGPAVFAGETAVFSLLLENRMPAARRLRVAVDGGEPRACELDAMSDGRVALAVVAARRGWTPLPACVVDSDA PFGLVRAWAVLKLRARVLAYPAPLPDAARGRHDTETGRGGGERAGDEDFSHLDAYRYGDAPRQIAWKVMARRDLLASKRF SAEAGAPLLRLGWDDYIGESDPERRLSRLAWRVEQCERRRLRYRLCLPDGEIGPQPGQRERALGALALFGSAP
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34916; Mature: 34785
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPFRERLRRWWRARLPLEDRCELSQRRIYLLPTRFGLLLMAVALAVWLGALNYQVSLAY CCHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH ALAFWIAGLLLVAVLMAYRQLAGLRLSADGGPAVFAGETAVFSLLLENRMPAARRLRVAV HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEECHHHHHHHHHHHCCCHHHEEEEEE DGGEPRACELDAMSDGRVALAVVAARRGWTPLPACVVDSDAPFGLVRAWAVLKLRARVLA ECCCCCEEEECCCCCCCEEEEEEHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH YPAPLPDAARGRHDTETGRGGGERAGDEDFSHLDAYRYGDAPRQIAWKVMARRDLLASKR CCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH FSAEAGAPLLRLGWDDYIGESDPERRLSRLAWRVEQCERRRLRYRLCLPDGEIGPQPGQR CCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH ERALGALALFGSAP HHHHHHHHHCCCCC >Mature Secondary Structure SPFRERLRRWWRARLPLEDRCELSQRRIYLLPTRFGLLLMAVALAVWLGALNYQVSLAY CHHHHHHHHHHHHCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH ALAFWIAGLLLVAVLMAYRQLAGLRLSADGGPAVFAGETAVFSLLLENRMPAARRLRVAV HHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEECHHHHHHHHHHHCCCHHHEEEEEE DGGEPRACELDAMSDGRVALAVVAARRGWTPLPACVVDSDAPFGLVRAWAVLKLRARVLA ECCCCCEEEECCCCCCCEEEEEEHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHH YPAPLPDAARGRHDTETGRGGGERAGDEDFSHLDAYRYGDAPRQIAWKVMARRDLLASKR CCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH FSAEAGAPLLRLGWDDYIGESDPERRLSRLAWRVEQCERRRLRYRLCLPDGEIGPQPGQR CCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH ERALGALALFGSAP HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA