Click here to switch to the map view.

The map label for this gene is clpS

Identifier: 34499123

GI number: 34499123

Start: 3969472

End: 3969792

Strand: Direct

Name: clpS

Synonym: CV_3668

Alternate gene names: 34499123

Gene position: 3969472-3969792 (Clockwise)

Preceding gene: 34499121

Following gene: 34499124

Centisome position: 83.55

GC content: 52.02

Gene sequence:

>321_bases
ATGAAAGTCGACATGTCCACCTCGGTCAAAGACGATGCCCAGCTTGAGGCGTCACGGGTTAGGGAAAACCCACCCCCGAT
GTATAAGGTGTTGTTATTGAACGATGATTTTACCCCGATGGACTTCGTGGTGCAGGTTCTCCAGCAGTTCTTCCACATGA
ACAGAGAGAAGGCCACCCACATCATGCTGCAAGTCCACACGCAAGGTCACGGCGTGTGTGGCGTTTATACCAAAGACGTG
GCTGCAACGAAGGTCGAGCAGGTGTTGCAATATGCGAAAGCGCATCAGCATCCGCTTCAGTGCGTAATGGAGGAAAACTG
A

Upstream 100 bases:

>100_bases
TTCTACGCAACCGCGGCGGCGGCGTCAAGTGATTGCGGTCTTCAGGCGCCCCTTGAAAAAAAGTCCGGGGGAACCAAAAT
TGAAGTGAGGCACCGTTTCC

Downstream 100 bases:

>100_bases
TGATTGCCCAGGAGCTTGAAGTAAGCCTGCACATGGCGTTCATGGACGCACGGCGCAAGCGCCACGAGTTCATCAGCGTG
GAGCATCTGCTGCTCGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MKVDMSTSVKDDAQLEASRVRENPPPMYKVLLLNDDFTPMDFVVQVLQQFFHMNREKATHIMLQVHTQGHGVCGVYTKDV
AATKVEQVLQYAKAHQHPLQCVMEEN

Sequences:

>Translated_106_residues
MKVDMSTSVKDDAQLEASRVRENPPPMYKVLLLNDDFTPMDFVVQVLQQFFHMNREKATHIMLQVHTQGHGVCGVYTKDV
AATKVEQVLQYAKAHQHPLQCVMEEN
>Mature_106_residues
MKVDMSTSVKDDAQLEASRVRENPPPMYKVLLLNDDFTPMDFVVQVLQQFFHMNREKATHIMLQVHTQGHGVCGVYTKDV
AATKVEQVLQYAKAHQHPLQCVMEEN

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=97, Percent_Identity=52.5773195876289, Blast_Score=112, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_CHRVO (Q7NRW1)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903338.1
- ProteinModelPortal:   Q7NRW1
- SMR:   Q7NRW1
- GeneID:   2548905
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3668
- NMPDR:   fig|243365.1.peg.3668
- HOGENOM:   HBG644923
- OMA:   LMNDDYT
- PhylomeDB:   Q7NRW1
- BioCyc:   CVIO243365:CV_3668-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12156; Mature: 12156

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVDMSTSVKDDAQLEASRVRENPPPMYKVLLLNDDFTPMDFVVQVLQQFFHMNREKATH
CCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEE
IMLQVHTQGHGVCGVYTKDVAATKVEQVLQYAKAHQHPLQCVMEEN
EEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHEEECCC
>Mature Secondary Structure
MKVDMSTSVKDDAQLEASRVRENPPPMYKVLLLNDDFTPMDFVVQVLQQFFHMNREKATH
CCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEE
IMLQVHTQGHGVCGVYTKDVAATKVEQVLQYAKAHQHPLQCVMEEN
EEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782