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The map label for this gene is rsmB [H]

Identifier: 34499073

GI number: 34499073

Start: 3922948

End: 3924207

Strand: Direct

Name: rsmB [H]

Synonym: CV_3618

Alternate gene names: 34499073

Gene position: 3922948-3924207 (Clockwise)

Preceding gene: 34499072

Following gene: 34499074

Centisome position: 82.57

GC content: 66.9

Gene sequence:

>1260_bases
ATGCACATTAGCCATAGCCAACTGAAACACCTGGAAACCGTCATCGGCCAGATGACCCGCTTCGACCGCCCCGCCGACGC
CGTGCTGTCGGCTTACTTCCGCGAGCACAACAAACTGGGCAGCGCCGACCGCCATCTGATCGCCGAAACCGCCTTCGGCG
CGCTGCGCCGCCTGATCCAGCTGCGCGCGCTGATCGCGCCGGAGAAGGCCACGCCGCGCCGGCTGGCGCTGGTGGCGCTG
ATGAAGTTCAACAAGCTGAACGTCAAGGAACTGAGCGAAGCCACCAGCGCCGGCGAGCGCGAATGGCTGGGCACGGTAAA
GGGCAAGGCGCTGGAAGACAGCCTGGAAATCCGCGCCGAGCTGCCGCAATGGGTGATCGAGCGCCTGGGCGAACAGGAGC
CGGCCGCGGTGGAAGCGCTGGGCCAGGGCCTGATGTCGATGGCGCCGCTGGATTTGCGCGTCAACACGCTGAAAATGAAG
CGCGAGGAATTGCTGGATCGCCTGAACGCGGACGGCATCGCCTGCGAAGCCACGCCGTATTCGCCGCTCGGCATCCGTCT
GAAAGACAAGCCGGCGCTGTCCAGGCACGAGCTGTTCAAGTCCGGCGCCTTCGAGGTGCAGGACGAAGGCAGCCAGCTTC
TGGGCCTGATCACCGGCGCGCGCCGCGGCGAAATGGTGGTGGACTTCTGCGCCGGCGCCGGCGGCAAGACCCTGCTCCTG
GGCGCGCAGATGGCGTCCAGCGGCCGCCTGTACGCGTTCGACGTGTCGGAGAAGCGCCTGGCCAACTTCAAGCCGCGCCA
GGCCCGCTCCGGCCTGTCCAACGTGCATCCGCAGCTGCTGTCGCACGAAAACGACGCCAAGGTGAAGCGCCTGGCCGGCA
AGGCCGACCGCGTGCTGGTGGACGCGCCCTGCTCCGGCCTGGGCACGCTGCGCCGCAACCCTGACCTGAAGTTCCGCCAG
AGCCCGGACAGCGTGGCCGAGCTGAACGCCAAGCAGGCGTCCATCCTCGCCTCCGCCTCGCGGCTGGTGAAGAACGGCGG
CCGGCTGGTGTACGCCACCTGCAGCCTGCTGCCGCAGGAGAACCAGGCCATCGTCGAAGCCTTCCTGGCCGAACACGCGG
ACTTCCGCCTGGTGAAGATGGACGAGGTGCTGGCCGAACAGAAAATCCCGCTGCAATGCGGCGACTACCTGGAGCTGAAA
CCGCATCTGCATAACACCGACGGCTTCTTCGCCGCGGTGCTGGAACGCAGCCAAGCCTAA

Upstream 100 bases:

>100_bases
GCCGACAAGGACAAGCGGATCGAGCTGAAAGCGATCCGCATAGACGTGAACGGCAAGCGGCAGTGGGAATTGCCGCCGCA
ACCGACGATACGGAACAAGA

Downstream 100 bases:

>100_bases
GCGGAACAAGGGCATGGACGGCGGCCCGCTTGCCACGCGCAGGCGGGCCGCCCTCGTATTAGGCGGCAATAGAGAGTATA
TTAGACAAAAATGATTAATG

Product: sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MHISHSQLKHLETVIGQMTRFDRPADAVLSAYFREHNKLGSADRHLIAETAFGALRRLIQLRALIAPEKATPRRLALVAL
MKFNKLNVKELSEATSAGEREWLGTVKGKALEDSLEIRAELPQWVIERLGEQEPAAVEALGQGLMSMAPLDLRVNTLKMK
REELLDRLNADGIACEATPYSPLGIRLKDKPALSRHELFKSGAFEVQDEGSQLLGLITGARRGEMVVDFCAGAGGKTLLL
GAQMASSGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLLSHENDAKVKRLAGKADRVLVDAPCSGLGTLRRNPDLKFRQ
SPDSVAELNAKQASILASASRLVKNGGRLVYATCSLLPQENQAIVEAFLAEHADFRLVKMDEVLAEQKIPLQCGDYLELK
PHLHNTDGFFAAVLERSQA

Sequences:

>Translated_419_residues
MHISHSQLKHLETVIGQMTRFDRPADAVLSAYFREHNKLGSADRHLIAETAFGALRRLIQLRALIAPEKATPRRLALVAL
MKFNKLNVKELSEATSAGEREWLGTVKGKALEDSLEIRAELPQWVIERLGEQEPAAVEALGQGLMSMAPLDLRVNTLKMK
REELLDRLNADGIACEATPYSPLGIRLKDKPALSRHELFKSGAFEVQDEGSQLLGLITGARRGEMVVDFCAGAGGKTLLL
GAQMASSGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLLSHENDAKVKRLAGKADRVLVDAPCSGLGTLRRNPDLKFRQ
SPDSVAELNAKQASILASASRLVKNGGRLVYATCSLLPQENQAIVEAFLAEHADFRLVKMDEVLAEQKIPLQCGDYLELK
PHLHNTDGFFAAVLERSQA
>Mature_419_residues
MHISHSQLKHLETVIGQMTRFDRPADAVLSAYFREHNKLGSADRHLIAETAFGALRRLIQLRALIAPEKATPRRLALVAL
MKFNKLNVKELSEATSAGEREWLGTVKGKALEDSLEIRAELPQWVIERLGEQEPAAVEALGQGLMSMAPLDLRVNTLKMK
REELLDRLNADGIACEATPYSPLGIRLKDKPALSRHELFKSGAFEVQDEGSQLLGLITGARRGEMVVDFCAGAGGKTLLL
GAQMASSGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLLSHENDAKVKRLAGKADRVLVDAPCSGLGTLRRNPDLKFRQ
SPDSVAELNAKQASILASASRLVKNGGRLVYATCSLLPQENQAIVEAFLAEHADFRLVKMDEVLAEQKIPLQCGDYLELK
PHLHNTDGFFAAVLERSQA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=283, Percent_Identity=29.3286219081272, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI76150623, Length=283, Percent_Identity=29.3286219081272, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI23199998, Length=300, Percent_Identity=29.6666666666667, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI270288816, Length=300, Percent_Identity=29.6666666666667, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI8922322, Length=300, Percent_Identity=29.6666666666667, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI270288818, Length=300, Percent_Identity=29.6666666666667, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI39995082, Length=204, Percent_Identity=29.9019607843137, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI301336155, Length=204, Percent_Identity=29.9019607843137, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI32698918, Length=182, Percent_Identity=27.4725274725275, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI11545785, Length=205, Percent_Identity=32.1951219512195, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI40316918, Length=222, Percent_Identity=28.8288288288288, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI2367212, Length=409, Percent_Identity=29.3398533007335, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI87081985, Length=280, Percent_Identity=29.6428571428571, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17536757, Length=284, Percent_Identity=29.9295774647887, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71998419, Length=341, Percent_Identity=25.2199413489736, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115534021, Length=228, Percent_Identity=29.3859649122807, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI25143471, Length=275, Percent_Identity=25.0909090909091, Blast_Score=75, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6324268, Length=283, Percent_Identity=25.7950530035336, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6319447, Length=267, Percent_Identity=27.7153558052434, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI22024126, Length=298, Percent_Identity=27.1812080536913, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21355201, Length=279, Percent_Identity=25.8064516129032, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21356579, Length=229, Percent_Identity=26.6375545851528, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19920494, Length=174, Percent_Identity=31.6091954022989, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 46061; Mature: 46061

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHISHSQLKHLETVIGQMTRFDRPADAVLSAYFREHNKLGSADRHLIAETAFGALRRLIQ
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LRALIAPEKATPRRLALVALMKFNKLNVKELSEATSAGEREWLGTVKGKALEDSLEIRAE
HHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHH
LPQWVIERLGEQEPAAVEALGQGLMSMAPLDLRVNTLKMKREELLDRLNADGIACEATPY
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCEEECCCCC
SPLGIRLKDKPALSRHELFKSGAFEVQDEGSQLLGLITGARRGEMVVDFCAGAGGKTLLL
CCCCEEECCCCCHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCEEEE
GAQMASSGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLLSHENDAKVKRLAGKADRVLV
EEEECCCCCEEEEECCHHHHHCCCCHHHHCCHHHCCHHHHCCCCHHHHHHHCCCCCEEEE
DAPCSGLGTLRRNPDLKFRQSPDSVAELNAKQASILASASRLVKNGGRLVYATCSLLPQE
ECCCCCCHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
NQAIVEAFLAEHADFRLVKMDEVLAEQKIPLQCGDYLELKPHLHNTDGFFAAVLERSQA
CHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MHISHSQLKHLETVIGQMTRFDRPADAVLSAYFREHNKLGSADRHLIAETAFGALRRLIQ
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LRALIAPEKATPRRLALVALMKFNKLNVKELSEATSAGEREWLGTVKGKALEDSLEIRAE
HHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHH
LPQWVIERLGEQEPAAVEALGQGLMSMAPLDLRVNTLKMKREELLDRLNADGIACEATPY
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCEEECCCCC
SPLGIRLKDKPALSRHELFKSGAFEVQDEGSQLLGLITGARRGEMVVDFCAGAGGKTLLL
CCCCEEECCCCCHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCEEEEEECCCCCCEEEE
GAQMASSGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLLSHENDAKVKRLAGKADRVLV
EEEECCCCCEEEEECCHHHHHCCCCHHHHCCHHHCCHHHHCCCCHHHHHHHCCCCCEEEE
DAPCSGLGTLRRNPDLKFRQSPDSVAELNAKQASILASASRLVKNGGRLVYATCSLLPQE
ECCCCCCHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
NQAIVEAFLAEHADFRLVKMDEVLAEQKIPLQCGDYLELKPHLHNTDGFFAAVLERSQA
CHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]