| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34499068
Identifier: 34499068
GI number: 34499068
Start: 3918419
End: 3919111
Strand: Reverse
Name: 34499068
Synonym: CV_3613
Alternate gene names: NA
Gene position: 3919111-3918419 (Counterclockwise)
Preceding gene: 34499069
Following gene: 34499067
Centisome position: 82.49
GC content: 63.49
Gene sequence:
>693_bases ATGACGACAGCCACTCCCGCCAAACGCAGGCTCGCCCTGTTCGACCTCGACCACACGCTGATCGCCGGCGACTCCGACTT CGAATGGCCGCGCTTCCTGATCAAGCGCGGCATTCTGGACGCCGCCCAGTACGACGAGCGCAACAGCTATTTCTACCGCC AGTACCAGAACGGCACGCTGGACATGAACGAGTACCTGGCGTTCATCCTGGCGCCGCTGACGCGCTTCTCGCGCCATCAG CTGGACGAACTGCACGCCGACTACCTGGAAAACCACATCAAGCCGCTGATCCCCAACAAGGCGCGCGAGCGGCTGGCCGC CCACCGCGCCGAAGGCGACCAGATCGTCATCATCACCGCGACCAACCGCTTCATCACCGGGCCGATCGCGCGCGAGCTGG GCGTCGAGCATCTGATCGCGATCGAGCTGGAGCAGGACGCCGACGGCAATTACACCGGTCGTCCTACCGGCGTGTTGAGC TTCAAGGAAGGCAAGATCACCCGCATCGAGCAATGGCTGGCCGAGCGCGGCGAGAGCTGGGACAGCTACGCCGAGAGCTT CTTCTACAGCGATTCGCACAACGACCTGCCGCTGATGAAGCTGGTGGACAATCCGGTGGCGGTGGACGCCGACGACAAGC TCAAGGCCTATGCCGAAGCGCACGGCTGGCCGGTGATCTCTTTACGCGATTGA
Upstream 100 bases:
>100_bases TCTCGATGATAGACATGCTGGATCGCTACTCGCTGGCGCTGCGGCGCCCGATCACCGTGCCGCTGGTGAAAAACGTTTTG CAAACCGCCACCCCGGAATC
Downstream 100 bases:
>100_bases TTTGGGCGCGGCCGACAAAACGCCCGATGCGGCGTTGCGCCGCCTTGCCGCACCCGACGTACTGTCTGCGGCGGCGCGGC TTTCCGCCGTTTGCGATCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MTTATPAKRRLALFDLDHTLIAGDSDFEWPRFLIKRGILDAAQYDERNSYFYRQYQNGTLDMNEYLAFILAPLTRFSRHQ LDELHADYLENHIKPLIPNKARERLAAHRAEGDQIVIITATNRFITGPIARELGVEHLIAIELEQDADGNYTGRPTGVLS FKEGKITRIEQWLAERGESWDSYAESFFYSDSHNDLPLMKLVDNPVAVDADDKLKAYAEAHGWPVISLRD
Sequences:
>Translated_230_residues MTTATPAKRRLALFDLDHTLIAGDSDFEWPRFLIKRGILDAAQYDERNSYFYRQYQNGTLDMNEYLAFILAPLTRFSRHQ LDELHADYLENHIKPLIPNKARERLAAHRAEGDQIVIITATNRFITGPIARELGVEHLIAIELEQDADGNYTGRPTGVLS FKEGKITRIEQWLAERGESWDSYAESFFYSDSHNDLPLMKLVDNPVAVDADDKLKAYAEAHGWPVISLRD >Mature_229_residues TTATPAKRRLALFDLDHTLIAGDSDFEWPRFLIKRGILDAAQYDERNSYFYRQYQNGTLDMNEYLAFILAPLTRFSRHQL DELHADYLENHIKPLIPNKARERLAAHRAEGDQIVIITATNRFITGPIARELGVEHLIAIELEQDADGNYTGRPTGVLSF KEGKITRIEQWLAERGESWDSYAESFFYSDSHNDLPLMKLVDNPVAVDADDKLKAYAEAHGWPVISLRD
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR006385 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26366; Mature: 26235
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTATPAKRRLALFDLDHTLIAGDSDFEWPRFLIKRGILDAAQYDERNSYFYRQYQNGTL CCCCCCCHHEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC DMNEYLAFILAPLTRFSRHQLDELHADYLENHIKPLIPNKARERLAAHRAEGDQIVIITA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEE TNRFITGPIARELGVEHLIAIELEQDADGNYTGRPTGVLSFKEGKITRIEQWLAERGESW CCCEEECHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCH DSYAESFFYSDSHNDLPLMKLVDNPVAVDADDKLKAYAEAHGWPVISLRD HHHHHHHEECCCCCCCCHHHCCCCCEEECCCHHHHHHHHHCCCEEEEECC >Mature Secondary Structure TTATPAKRRLALFDLDHTLIAGDSDFEWPRFLIKRGILDAAQYDERNSYFYRQYQNGTL CCCCCCHHEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC DMNEYLAFILAPLTRFSRHQLDELHADYLENHIKPLIPNKARERLAAHRAEGDQIVIITA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEE TNRFITGPIARELGVEHLIAIELEQDADGNYTGRPTGVLSFKEGKITRIEQWLAERGESW CCCEEECHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCH DSYAESFFYSDSHNDLPLMKLVDNPVAVDADDKLKAYAEAHGWPVISLRD HHHHHHHEECCCCCCCCHHHCCCCCEEECCCHHHHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]