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The map label for this gene is ycfD [H]

Identifier: 34499036

GI number: 34499036

Start: 3889473

End: 3890606

Strand: Reverse

Name: ycfD [H]

Synonym: CV_3581

Alternate gene names: 34499036

Gene position: 3890606-3889473 (Counterclockwise)

Preceding gene: 34499038

Following gene: 34499035

Centisome position: 81.89

GC content: 61.29

Gene sequence:

>1134_bases
ATGAATACCACAAACTTGCTGGGCGGCATGCCGCCCGAACAATTCCTGGCCGAATACTGGCACAAGAAACCGTTATTGAT
CCGCGGCGCGCTGACCGATGTCGGCCCGCACGTCGACTTTTCCGTCTTGTCCGAACTGGCGCAACGGGACGACGCCGAGT
CCCGGCTGATCGAATACAAGAAAGACAAGTGGCACCTGGAGCGCGGTCCCTTCCGCGCCTCGCGCTTCCGCCGGCTGGCG
GAAACCGACTGGACGCTGCTGGTTCAGGGCGTCAACCACCATCTGCCGCACATCGACGACATCCTGTGGCGCTTCAATTT
CATCCCCTATGCCAGGCTGGACGATCTGATGATCAGCTATGCCCCGCCAGGCGGCACGGTCGGCCCGCATTTCGACGCCT
ACGATGTGTTCCTGCTGCAAGTGGGCGGCAAGAAGCGCTGGCAGATTTCCTCGCAACACGACGACGACTTCATCGAAGAC
GCGCCGATCCGCGTGCTGAAGGATTTCCGCATGGAGCAGGAGTTCGTGCTGGAACACGGGGACATGCTGTACCTACCGCC
CCACTGCGCGCACTACGGCGTGGCGCTGGAGCCGGGCATGACTTACTCGATCGGTTTCCGCGCGCCGCCGGCGCAGGAGC
TGGCCGCCCAGTTCCTGGTCTATCTGCAGGACCGCGTCTGCATCGACGGGGTTTACGCCGACCCGGATCTGAAGCTGCAG
GCCGATCCGGCGAAGATAGGCGGCGAGATGATCGATCAGGTCGCCGGCCTGTTGTCCAAGATTCGTTGGGACAAGGACAC
GGTCTGCGATTTCCTCGGCCATTATCTGACCGAGCCCAAGGCGCACGTATTTTACGATTCGCCCGAGGACGAGCTGGATG
AGGAGGCGTTTGCCGAGGCGGTGGCCGAGCGCGGCCTGGAGCTGGATCGCAAGAGCCAGATCCTGTACTGCGACGCCTGC
GTCTACTGCAACGGCGAGAAAGTGGATGCCGCCGATGGTGATTTTGCCGATTGGCAACACTTCGGCAACCGCAGGCGGCT
GCCGGCGGGCTCTTATTCGGCCGATATGATAGACGCGCTGTACGATGGCTATCTGTCAGGTTATTGGCATCTTTCGTCTT
TTGTCGCAGAATAG

Upstream 100 bases:

>100_bases
GACGGTCCCGAGGGTGTTCCTTCCACCGCAAGATAGGACGCTCGCGCGTCTAGCTGGCGTATTGTAAACCATAGACGGGC
GGCTGAGCCCGTAAAAGCAG

Downstream 100 bases:

>100_bases
CAACAGTTTTCTTGCTTGTATCGACCGAGCAACGCGATGGAAGGCTGGATTTGGGGGGCAAACGCCCGTTTTAGTGCCTG
AGCGGACACATGCCAGCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MNTTNLLGGMPPEQFLAEYWHKKPLLIRGALTDVGPHVDFSVLSELAQRDDAESRLIEYKKDKWHLERGPFRASRFRRLA
ETDWTLLVQGVNHHLPHIDDILWRFNFIPYARLDDLMISYAPPGGTVGPHFDAYDVFLLQVGGKKRWQISSQHDDDFIED
APIRVLKDFRMEQEFVLEHGDMLYLPPHCAHYGVALEPGMTYSIGFRAPPAQELAAQFLVYLQDRVCIDGVYADPDLKLQ
ADPAKIGGEMIDQVAGLLSKIRWDKDTVCDFLGHYLTEPKAHVFYDSPEDELDEEAFAEAVAERGLELDRKSQILYCDAC
VYCNGEKVDAADGDFADWQHFGNRRRLPAGSYSADMIDALYDGYLSGYWHLSSFVAE

Sequences:

>Translated_377_residues
MNTTNLLGGMPPEQFLAEYWHKKPLLIRGALTDVGPHVDFSVLSELAQRDDAESRLIEYKKDKWHLERGPFRASRFRRLA
ETDWTLLVQGVNHHLPHIDDILWRFNFIPYARLDDLMISYAPPGGTVGPHFDAYDVFLLQVGGKKRWQISSQHDDDFIED
APIRVLKDFRMEQEFVLEHGDMLYLPPHCAHYGVALEPGMTYSIGFRAPPAQELAAQFLVYLQDRVCIDGVYADPDLKLQ
ADPAKIGGEMIDQVAGLLSKIRWDKDTVCDFLGHYLTEPKAHVFYDSPEDELDEEAFAEAVAERGLELDRKSQILYCDAC
VYCNGEKVDAADGDFADWQHFGNRRRLPAGSYSADMIDALYDGYLSGYWHLSSFVAE
>Mature_377_residues
MNTTNLLGGMPPEQFLAEYWHKKPLLIRGALTDVGPHVDFSVLSELAQRDDAESRLIEYKKDKWHLERGPFRASRFRRLA
ETDWTLLVQGVNHHLPHIDDILWRFNFIPYARLDDLMISYAPPGGTVGPHFDAYDVFLLQVGGKKRWQISSQHDDDFIED
APIRVLKDFRMEQEFVLEHGDMLYLPPHCAHYGVALEPGMTYSIGFRAPPAQELAAQFLVYLQDRVCIDGVYADPDLKLQ
ADPAKIGGEMIDQVAGLLSKIRWDKDTVCDFLGHYLTEPKAHVFYDSPEDELDEEAFAEAVAERGLELDRKSQILYCDAC
VYCNGEKVDAADGDFADWQHFGNRRRLPAGSYSADMIDALYDGYLSGYWHLSSFVAE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=325, Percent_Identity=32.6153846153846, Blast_Score=178, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42996; Mature: 42996

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTNLLGGMPPEQFLAEYWHKKPLLIRGALTDVGPHVDFSVLSELAQRDDAESRLIEYK
CCCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHCCCCCCHHHHHHHHHCCCHHHHHHHHH
KDKWHLERGPFRASRFRRLAETDWTLLVQGVNHHLPHIDDILWRFNFIPYARLDDLMISY
HCHHCCCCCCCHHHHHHHHHHCCHHEEEECHHCCCCHHHHHHHHHCCCCHHHHCCEEEEE
APPGGTVGPHFDAYDVFLLQVGGKKRWQISSQHDDDFIEDAPIRVLKDFRMEQEFVLEHG
CCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHCC
DMLYLPPHCAHYGVALEPGMTYSIGFRAPPAQELAAQFLVYLQDRVCIDGVYADPDLKLQ
CEEEECCCHHHCCEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEE
ADPAKIGGEMIDQVAGLLSKIRWDKDTVCDFLGHYLTEPKAHVFYDSPEDELDEEAFAEA
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
VAERGLELDRKSQILYCDACVYCNGEKVDAADGDFADWQHFGNRRRLPAGSYSADMIDAL
HHHCCCCCCCCCCEEEEEEEEEECCCEECCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHH
YDGYLSGYWHLSSFVAE
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTTNLLGGMPPEQFLAEYWHKKPLLIRGALTDVGPHVDFSVLSELAQRDDAESRLIEYK
CCCCCCCCCCCHHHHHHHHHCCCCEEEEECHHHCCCCCCHHHHHHHHHCCCHHHHHHHHH
KDKWHLERGPFRASRFRRLAETDWTLLVQGVNHHLPHIDDILWRFNFIPYARLDDLMISY
HCHHCCCCCCCHHHHHHHHHHCCHHEEEECHHCCCCHHHHHHHHHCCCCHHHHCCEEEEE
APPGGTVGPHFDAYDVFLLQVGGKKRWQISSQHDDDFIEDAPIRVLKDFRMEQEFVLEHG
CCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHCC
DMLYLPPHCAHYGVALEPGMTYSIGFRAPPAQELAAQFLVYLQDRVCIDGVYADPDLKLQ
CEEEECCCHHHCCEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEE
ADPAKIGGEMIDQVAGLLSKIRWDKDTVCDFLGHYLTEPKAHVFYDSPEDELDEEAFAEA
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
VAERGLELDRKSQILYCDACVYCNGEKVDAADGDFADWQHFGNRRRLPAGSYSADMIDAL
HHHCCCCCCCCCCEEEEEEEEEECCCEECCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHH
YDGYLSGYWHLSSFVAE
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]