Click here to switch to the map view.

The map label for this gene is ybiT [H]

Identifier: 34499032

GI number: 34499032

Start: 3884928

End: 3886559

Strand: Reverse

Name: ybiT [H]

Synonym: CV_3577

Alternate gene names: 34499032

Gene position: 3886559-3884928 (Counterclockwise)

Preceding gene: 34499035

Following gene: 34499031

Centisome position: 81.8

GC content: 62.07

Gene sequence:

>1632_bases
GTGATTACCACAAGCAACATTACCATGCAGTTTGGCGTGAAACCTCTGTTCGAGAAGGTTAGCGTCAAATTCGGCGAAGG
CAACCGTTACGGCCTGATCGGCGCCAACGGTTCCGGCAAATCCACTTTCATGAAAATCCTGGGTGGCGACCTGGAGCAGA
CCGCGGGCGAAGTCGCCATCGAGAACGGCCTGCGCCTGGGTAAGCTGCGCCAGGACCAGTTCGGCTATGAAGACCAGCGC
GTCATCGACGTGGTGATGATGGGCCATACCGAGATGTGGGCGGCGATGAGCGAACGCGACGCCATCTACGCCAATCTGGA
AGCCACCGAAGACGACTACATGCGCGCGGCCGATCTGGAGGCCAAGTTCGCCGAGTACGACGGCTACACCGCCGAAGCGC
GCGCCGGCGAGCTGCTGATGGGCGTCGGCATTCCGGTCGAGCAGCATTTCGGTCCGATGAGCGAAGTCGCCCCGGGCTGG
AAGCTGCGGGTGCTGCTGGCGCAGGCGCTGTTCTCCAACCCGGACATCCTGCTGCTCGACGAGCCGACCAACAACCTGGA
CATCAACACCATCCGCTGGCTGGAGCACGTGCTGAACGAGCGCAACTCCACCATGATCATCATCTCGCACGACCGCCACT
TCCTGAATTCGGTCTGCACCCACATGGCGGATCTGGACTACAACACCATCCGCATTTACCCGGGCAATTACGACGACTAC
ATGATCGCGTCGGCCCAGGCCCGCGAGCGTCAGCTGTCGTCCAACAGCAAGGCCAAGGAGCGCATTCAGGAGCTGCAGGA
GTTCGTGGCCCGCTTCTCCGCCAACAAGTCCAAGGCCCGCCAGGCGACTTCCCGCCTGAAGCAGGTGGACAAGCTGAAGT
CCGAGATGGTGGAAGTGAAGCCGTCCAGCCGCCAGAACCCGTTCATCCGCTTCGAGATGGACGACAAGTTCAAGCTGCAC
CGCCAGGCGGTGGAGGTGGAAGGCCTGAGCAAGGCTTACGACAACAAGGTGCTGTTCAAGGATCTGAACCTGATCCTGGA
AGCCGGCGCGCGCCTGGCCATCATCGGCCCCAACGGCGCGGGCAAGACCTCGCTGATCAAGCTGCTGGCCGGCGCGTTCG
AGCCGGCTTACGCCGAAGGCCTGACCGCCGATCGCGGCACGATCAAGTGGGCGGAGAAGGCGCAGATCGGCTACTTCGCC
CAGGATCACGAGGCCGACTTCGACAGCGACGCCACGCTGACTGAGTGGATGCGCGAATGGGGCCAGGAAGGCGACGATGA
GCAGGTGATCCGCGGCACGCTGGGCCGTCTCTTGTTCGGCGGCGACGAGGTGGGCAAGCCGGTGCGCGTGCTGTCCGGCG
GCGAGAAGGGCCGCATGCTGTACGGCAAGCTGATCCTGCAGAAGCCCAATGTGATGATCATGGACGAGCCGACCAACCAC
ATGGACATGGAATCGATCGAATCCTTGAACATGGCGCTGGAGAAGTACAAGGGCACGCTGATCTTCGTATCGCACGATCG
CCAGTTCGTGAGCTCCCTGGCCACCCACGTGCTGGAGCTGGACGGCAAGGGCGGTTACGACTACTACACCGGCAACTACG
AAGACTACCTGGCCAGCAAGGGCCTGGAGTAA

Upstream 100 bases:

>100_bases
CGTGAGCCAGGCCCCCGCAAGGCTTCGGGGAACGGTCCTCATTGTGATAGAATCCTACGTTTTTCCGATACTTACGGCTC
TGGCTGAAGGATCCTCAAGC

Downstream 100 bases:

>100_bases
TCAACGGTCATACGGATACGGTCTGTCACAGGCCGTAACTTTACCGGCGGGAGGGCGTGCGCTATATTGCGGTGCACAAA
CTCCCGCTTTTCATATCCGC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MITTSNITMQFGVKPLFEKVSVKFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIENGLRLGKLRQDQFGYEDQR
VIDVVMMGHTEMWAAMSERDAIYANLEATEDDYMRAADLEAKFAEYDGYTAEARAGELLMGVGIPVEQHFGPMSEVAPGW
KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEHVLNERNSTMIIISHDRHFLNSVCTHMADLDYNTIRIYPGNYDDY
MIASAQARERQLSSNSKAKERIQELQEFVARFSANKSKARQATSRLKQVDKLKSEMVEVKPSSRQNPFIRFEMDDKFKLH
RQAVEVEGLSKAYDNKVLFKDLNLILEAGARLAIIGPNGAGKTSLIKLLAGAFEPAYAEGLTADRGTIKWAEKAQIGYFA
QDHEADFDSDATLTEWMREWGQEGDDEQVIRGTLGRLLFGGDEVGKPVRVLSGGEKGRMLYGKLILQKPNVMIMDEPTNH
MDMESIESLNMALEKYKGTLIFVSHDRQFVSSLATHVLELDGKGGYDYYTGNYEDYLASKGLE

Sequences:

>Translated_543_residues
MITTSNITMQFGVKPLFEKVSVKFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIENGLRLGKLRQDQFGYEDQR
VIDVVMMGHTEMWAAMSERDAIYANLEATEDDYMRAADLEAKFAEYDGYTAEARAGELLMGVGIPVEQHFGPMSEVAPGW
KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEHVLNERNSTMIIISHDRHFLNSVCTHMADLDYNTIRIYPGNYDDY
MIASAQARERQLSSNSKAKERIQELQEFVARFSANKSKARQATSRLKQVDKLKSEMVEVKPSSRQNPFIRFEMDDKFKLH
RQAVEVEGLSKAYDNKVLFKDLNLILEAGARLAIIGPNGAGKTSLIKLLAGAFEPAYAEGLTADRGTIKWAEKAQIGYFA
QDHEADFDSDATLTEWMREWGQEGDDEQVIRGTLGRLLFGGDEVGKPVRVLSGGEKGRMLYGKLILQKPNVMIMDEPTNH
MDMESIESLNMALEKYKGTLIFVSHDRQFVSSLATHVLELDGKGGYDYYTGNYEDYLASKGLE
>Mature_543_residues
MITTSNITMQFGVKPLFEKVSVKFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAIENGLRLGKLRQDQFGYEDQR
VIDVVMMGHTEMWAAMSERDAIYANLEATEDDYMRAADLEAKFAEYDGYTAEARAGELLMGVGIPVEQHFGPMSEVAPGW
KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEHVLNERNSTMIIISHDRHFLNSVCTHMADLDYNTIRIYPGNYDDY
MIASAQARERQLSSNSKAKERIQELQEFVARFSANKSKARQATSRLKQVDKLKSEMVEVKPSSRQNPFIRFEMDDKFKLH
RQAVEVEGLSKAYDNKVLFKDLNLILEAGARLAIIGPNGAGKTSLIKLLAGAFEPAYAEGLTADRGTIKWAEKAQIGYFA
QDHEADFDSDATLTEWMREWGQEGDDEQVIRGTLGRLLFGGDEVGKPVRVLSGGEKGRMLYGKLILQKPNVMIMDEPTNH
MDMESIESLNMALEKYKGTLIFVSHDRQFVSSLATHVLELDGKGGYDYYTGNYEDYLASKGLE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=544, Percent_Identity=32.1691176470588, Blast_Score=273, Evalue=3e-73,
Organism=Homo sapiens, GI10947137, Length=541, Percent_Identity=29.9445471349353, Blast_Score=243, Evalue=4e-64,
Organism=Homo sapiens, GI27881506, Length=541, Percent_Identity=29.9445471349353, Blast_Score=243, Evalue=5e-64,
Organism=Homo sapiens, GI10947135, Length=536, Percent_Identity=29.4776119402985, Blast_Score=204, Evalue=2e-52,
Organism=Homo sapiens, GI69354671, Length=536, Percent_Identity=29.4776119402985, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI4506341, Length=208, Percent_Identity=31.7307692307692, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1787041, Length=543, Percent_Identity=68.6924493554328, Blast_Score=782, Evalue=0.0,
Organism=Escherichia coli, GI1789751, Length=542, Percent_Identity=32.4723247232472, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI1787182, Length=550, Percent_Identity=32.9090909090909, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI2367384, Length=530, Percent_Identity=28.8679245283019, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI1788165, Length=202, Percent_Identity=29.7029702970297, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1786975, Length=529, Percent_Identity=23.062381852552, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=30.3482587064677, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=27.4678111587983, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787164, Length=219, Percent_Identity=26.4840182648402, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=521, Percent_Identity=32.4376199616123, Blast_Score=259, Evalue=2e-69,
Organism=Caenorhabditis elegans, GI17555318, Length=525, Percent_Identity=30.0952380952381, Blast_Score=246, Evalue=2e-65,
Organism=Caenorhabditis elegans, GI17559834, Length=556, Percent_Identity=29.4964028776978, Blast_Score=240, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6320874, Length=543, Percent_Identity=29.097605893186, Blast_Score=242, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6321121, Length=538, Percent_Identity=29.368029739777, Blast_Score=237, Evalue=3e-63,
Organism=Saccharomyces cerevisiae, GI6323278, Length=431, Percent_Identity=27.3781902552204, Blast_Score=132, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6324314, Length=431, Percent_Identity=26.6821345707657, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6325030, Length=435, Percent_Identity=26.2068965517241, Blast_Score=127, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=29.6296296296296, Blast_Score=256, Evalue=3e-68,
Organism=Drosophila melanogaster, GI24642252, Length=552, Percent_Identity=29.1666666666667, Blast_Score=247, Evalue=1e-65,
Organism=Drosophila melanogaster, GI18859989, Length=552, Percent_Identity=29.1666666666667, Blast_Score=247, Evalue=1e-65,
Organism=Drosophila melanogaster, GI24641342, Length=545, Percent_Identity=27.5229357798165, Blast_Score=221, Evalue=8e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60890; Mature: 60890

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITTSNITMQFGVKPLFEKVSVKFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAI
CEECCCEEEEECCHHHHHHHEEEECCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHH
ENGLRLGKLRQDQFGYEDQRVIDVVMMGHTEMWAAMSERDAIYANLEATEDDYMRAADLE
HCCCCCCCCCHHHCCCCCHHEEEEEEECCHHHHHHHHCCCCEEEECCCCCHHHHHHHCCH
AKFAEYDGYTAEARAGELLMGVGIPVEQHFGPMSEVAPGWKLRVLLAQALFSNPDILLLD
HHHHHCCCCCCCCCCCCEEEECCCCHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEE
EPTNNLDINTIRWLEHVLNERNSTMIIISHDRHFLNSVCTHMADLDYNTIRIYPGNYDDY
CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCE
MIASAQARERQLSSNSKAKERIQELQEFVARFSANKSKARQATSRLKQVDKLKSEMVEVK
EEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECC
PSSRQNPFIRFEMDDKFKLHRQAVEVEGLSKAYDNKVLFKDLNLILEAGARLAIIGPNGA
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCC
GKTSLIKLLAGAFEPAYAEGLTADRGTIKWAEKAQIGYFAQDHEADFDSDATLTEWMREW
CHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHH
GQEGDDEQVIRGTLGRLLFGGDEVGKPVRVLSGGEKGRMLYGKLILQKPNVMIMDEPTNH
CCCCCHHHHHHHHHHHHEECCHHCCCCEEEECCCCCCCEEEEEEEEECCCEEEEECCCCC
MDMESIESLNMALEKYKGTLIFVSHDRQFVSSLATHVLELDGKGGYDYYTGNYEDYLASK
CCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHC
GLE
CCC
>Mature Secondary Structure
MITTSNITMQFGVKPLFEKVSVKFGEGNRYGLIGANGSGKSTFMKILGGDLEQTAGEVAI
CEECCCEEEEECCHHHHHHHEEEECCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHH
ENGLRLGKLRQDQFGYEDQRVIDVVMMGHTEMWAAMSERDAIYANLEATEDDYMRAADLE
HCCCCCCCCCHHHCCCCCHHEEEEEEECCHHHHHHHHCCCCEEEECCCCCHHHHHHHCCH
AKFAEYDGYTAEARAGELLMGVGIPVEQHFGPMSEVAPGWKLRVLLAQALFSNPDILLLD
HHHHHCCCCCCCCCCCCEEEECCCCHHHHCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEE
EPTNNLDINTIRWLEHVLNERNSTMIIISHDRHFLNSVCTHMADLDYNTIRIYPGNYDDY
CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCE
MIASAQARERQLSSNSKAKERIQELQEFVARFSANKSKARQATSRLKQVDKLKSEMVEVK
EEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECC
PSSRQNPFIRFEMDDKFKLHRQAVEVEGLSKAYDNKVLFKDLNLILEAGARLAIIGPNGA
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCC
GKTSLIKLLAGAFEPAYAEGLTADRGTIKWAEKAQIGYFAQDHEADFDSDATLTEWMREW
CHHHHHHHHHHCCCCHHHCCCCCCCCCEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHH
GQEGDDEQVIRGTLGRLLFGGDEVGKPVRVLSGGEKGRMLYGKLILQKPNVMIMDEPTNH
CCCCCHHHHHHHHHHHHEECCHHCCCCEEEECCCCCCCEEEEEEEEECCCEEEEECCCCC
MDMESIESLNMALEKYKGTLIFVSHDRQFVSSLATHVLELDGKGGYDYYTGNYEDYLASK
CCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHC
GLE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]