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The map label for this gene is rdgC [H]

Identifier: 34499003

GI number: 34499003

Start: 3855646

End: 3856641

Strand: Direct

Name: rdgC [H]

Synonym: CV_3548

Alternate gene names: 34499003

Gene position: 3855646-3856641 (Clockwise)

Preceding gene: 34498998

Following gene: 34499004

Centisome position: 81.15

GC content: 66.16

Gene sequence:

>996_bases
ATGTGGTTTAGGCAACTATCTTTTTATCGTTTGAGCGGCGAAAGCCTGGTGGACGCCGATAAGCTGTTGCAGGCATTGGA
AAAACGTCCGTTTCAACCCTGCATGGGCCTGGATTGGTTCAGCGAAGGCTGGGTGGCGCCGGCCGGGCACCTGGAAGCGC
CGGTCTACGCCGCCCGCGGCAGCCTGATGGTTTCCATGCGCCGCGAAGACAAGGTTTTGCCGGCCTCGGTGATCCGCGAC
TTCGTCGAAATGAAAGTGCAGGAGATCGAGGACAAGGAGCTGCGCAAAGTCGGCCGCAAGGAAAAGCTGGCGCTGAAAGA
GCAGATCACCGACGACCTGCTGCCGCGCGCCTTCGTGCGCAGCGGCCGCACCAGCGCCTACCTGGACATCGCCCGCGGCT
GGTTGATGGTGGACTCCGGCTCTTCCAGCAAGGCCGAGGCGCTGGTCTCCAAGCTGCGCGAGGCGCTGCCGCCCTTCCCG
GCCGCGCTGCCGCGCACCCGGATCGCGCCGCACACCGCGATGACCGACTGGCTGGCGGCCGGCGAAGCCCCGGGCGGCTT
CGAGCTGGACGCCGACTGCGAACTGAAGGACGGCAGCGAAAACGGCGCGGTGGTGCGCTGCAGCCGCATCGACCTGACCA
GCGACGAGATCCGCCAGCACATCGCCACCGGCAAGCAGGCCACCAAGCTGGGCCTGATCTGGAACGAGAAGATCCGCTTC
CAGCTGACCGACACGCTGCAGCTGAAGCGCATCCAGTTCCTGGACATGCTGCAGGACGAAGCCAGCCAGGCCGGCGACGA
CCGCGAAAGCCTGTTCGAAGCCACCTTCATCCTAATGAGCGAAGAGCTGGGCGAACTGGTGGAAGCGCTGGTGGAGGCGC
TGGGCGGCCTGGAAGACAGCCAGGCGCAGCCTGCGGCGTCCTCTCCGGCTCCGACTCCCGCGCCGCAAACGGCCCCCGCC
GATTCGGGCGGCGCCGTCGACGTACCCTGGGACTAA

Upstream 100 bases:

>100_bases
CCGACGACCCGCTTACAAACTGCTTGTCTGAAAAACTGCTGCTGCATCGCTTGCTGCGGTACAATCAGCGGCTTCAGAGG
ACGCGCATTATGGAACAAAT

Downstream 100 bases:

>100_bases
GCCCTCCCTCCTCCCGCGAACCACCCGGCTCCGCCGGGTTTTTTTGCGTCCATCCACAGCCGGCTTTCTGCCATTAAGAA
AAACTAACTATCGATTTAAA

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MWFRQLSFYRLSGESLVDADKLLQALEKRPFQPCMGLDWFSEGWVAPAGHLEAPVYAARGSLMVSMRREDKVLPASVIRD
FVEMKVQEIEDKELRKVGRKEKLALKEQITDDLLPRAFVRSGRTSAYLDIARGWLMVDSGSSSKAEALVSKLREALPPFP
AALPRTRIAPHTAMTDWLAAGEAPGGFELDADCELKDGSENGAVVRCSRIDLTSDEIRQHIATGKQATKLGLIWNEKIRF
QLTDTLQLKRIQFLDMLQDEASQAGDDRESLFEATFILMSEELGELVEALVEALGGLEDSQAQPAASSPAPTPAPQTAPA
DSGGAVDVPWD

Sequences:

>Translated_331_residues
MWFRQLSFYRLSGESLVDADKLLQALEKRPFQPCMGLDWFSEGWVAPAGHLEAPVYAARGSLMVSMRREDKVLPASVIRD
FVEMKVQEIEDKELRKVGRKEKLALKEQITDDLLPRAFVRSGRTSAYLDIARGWLMVDSGSSSKAEALVSKLREALPPFP
AALPRTRIAPHTAMTDWLAAGEAPGGFELDADCELKDGSENGAVVRCSRIDLTSDEIRQHIATGKQATKLGLIWNEKIRF
QLTDTLQLKRIQFLDMLQDEASQAGDDRESLFEATFILMSEELGELVEALVEALGGLEDSQAQPAASSPAPTPAPQTAPA
DSGGAVDVPWD
>Mature_331_residues
MWFRQLSFYRLSGESLVDADKLLQALEKRPFQPCMGLDWFSEGWVAPAGHLEAPVYAARGSLMVSMRREDKVLPASVIRD
FVEMKVQEIEDKELRKVGRKEKLALKEQITDDLLPRAFVRSGRTSAYLDIARGWLMVDSGSSSKAEALVSKLREALPPFP
AALPRTRIAPHTAMTDWLAAGEAPGGFELDADCELKDGSENGAVVRCSRIDLTSDEIRQHIATGKQATKLGLIWNEKIRF
QLTDTLQLKRIQFLDMLQDEASQAGDDRESLFEATFILMSEELGELVEALVEALGGLEDSQAQPAASSPAPTPAPQTAPA
DSGGAVDVPWD

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=301, Percent_Identity=39.202657807309, Blast_Score=212, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 36441; Mature: 36441

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFRQLSFYRLSGESLVDADKLLQALEKRPFQPCMGLDWFSEGWVAPAGHLEAPVYAARG
CCCHHCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
SLMVSMRREDKVLPASVIRDFVEMKVQEIEDKELRKVGRKEKLALKEQITDDLLPRAFVR
CEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
SGRTSAYLDIARGWLMVDSGSSSKAEALVSKLREALPPFPAALPRTRIAPHTAMTDWLAA
CCCCHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
GEAPGGFELDADCELKDGSENGAVVRCSRIDLTSDEIRQHIATGKQATKLGLIWNEKIRF
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHEEEEEECCEEEE
QLTDTLQLKRIQFLDMLQDEASQAGDDRESLFEATFILMSEELGELVEALVEALGGLEDS
EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QAQPAASSPAPTPAPQTAPADSGGAVDVPWD
CCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
>Mature Secondary Structure
MWFRQLSFYRLSGESLVDADKLLQALEKRPFQPCMGLDWFSEGWVAPAGHLEAPVYAARG
CCCHHCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
SLMVSMRREDKVLPASVIRDFVEMKVQEIEDKELRKVGRKEKLALKEQITDDLLPRAFVR
CEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
SGRTSAYLDIARGWLMVDSGSSSKAEALVSKLREALPPFPAALPRTRIAPHTAMTDWLAA
CCCCHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
GEAPGGFELDADCELKDGSENGAVVRCSRIDLTSDEIRQHIATGKQATKLGLIWNEKIRF
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHEEEEEECCEEEE
QLTDTLQLKRIQFLDMLQDEASQAGDDRESLFEATFILMSEELGELVEALVEALGGLEDS
EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
QAQPAASSPAPTPAPQTAPADSGGAVDVPWD
CCCCCCCCCCCCCCCCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA