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The map label for this gene is queD [H]

Identifier: 34498963

GI number: 34498963

Start: 3808124

End: 3808843

Strand: Direct

Name: queD [H]

Synonym: CV_3508

Alternate gene names: 34498963

Gene position: 3808124-3808843 (Clockwise)

Preceding gene: 34498962

Following gene: 34498964

Centisome position: 80.15

GC content: 67.64

Gene sequence:

>720_bases
GTGATGCTGGACGGCCCGCGCGCGCTCAGCTGGATCGCCTCGTCTTTCGAGGCCGCCCATCACCTGCCCCACGTGCCGCC
CGGCCATAAGTGCGGCCGCCTGCACGGCCACGGCTTCGGCGTGCGCATCGTCGCCGACGCCGCCCAGTGCGGCCAGCGCG
AATTGGCGCGCGCCTGGGCGCCGCTGCATCGACGGCTCAACCATCACTACCTGAACGACATCGCCGGGCTGGACAATCCG
ACCAGCGAGGTGCTGGCCCAATGGCTGCACCAGCAGCTGAGCGATGCCGTGCCCGGCCTCGCCTGGGTAGAGGTGCGCGA
AACGCACAGCGCCGGCAGCCAGTTCGACGGCAAGACCTTCCGCATCTGGAAGGAGCAACGCTTCGAAAGCGCAATCCCTT
TCGACGCCGACGGCAATTACACCGGCCACAGCTACCTGGTGCGGCTGATGTTGTCCGGCGGCATAGACCGCACCATGGGC
TGGCTGCTGGACTTCGGCGACGTCAAGGACCGCTTCAAGCCCATCTACCGCCAGTTGGACCACAATCCGCTGGACAAGCT
GGCCGGCGTTCGCGGCGCCGACAGCGCCGCGGTGGCGGAATGGATCCACGCCCAGCTGTCGCCGCTGGTGCCGGAATTGT
CCCGGATAGACCTGATGGAAAGCGACGACGCCGGCGTGTCGCTGCATTTCCGCCAGGACATGCGCTGGCCGCTGCTGTGA

Upstream 100 bases:

>100_bases
CGCGCTGGCCGCCTGCGACGATCTCTCGCTGGCCCGGCACGTTGCCGACGCCCTGCCCCATCCGGCCGCCATCCAGTTGC
GCGGCGCGCCGGACCGCGGC

Downstream 100 bases:

>100_bases
CCGCCGCCCTCGATTGCGAGAAAATGTCGTGACTACCTATACCGTCAAGGAAATCTTCTACACGCTGCAAGGCGAAGGCC
GTCAGGCCGGCCGCGCGGCG

Product: 6-pyruvoyltetrahydrobiopterin synthase

Products: 6-pyruvoyl-5,6,7,8-tetrahydropterin; triphosphate

Alternate protein names: CPH4 synthase; Queuosine biosynthesis protein queD [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MMLDGPRALSWIASSFEAAHHLPHVPPGHKCGRLHGHGFGVRIVADAAQCGQRELARAWAPLHRRLNHHYLNDIAGLDNP
TSEVLAQWLHQQLSDAVPGLAWVEVRETHSAGSQFDGKTFRIWKEQRFESAIPFDADGNYTGHSYLVRLMLSGGIDRTMG
WLLDFGDVKDRFKPIYRQLDHNPLDKLAGVRGADSAAVAEWIHAQLSPLVPELSRIDLMESDDAGVSLHFRQDMRWPLL

Sequences:

>Translated_239_residues
MMLDGPRALSWIASSFEAAHHLPHVPPGHKCGRLHGHGFGVRIVADAAQCGQRELARAWAPLHRRLNHHYLNDIAGLDNP
TSEVLAQWLHQQLSDAVPGLAWVEVRETHSAGSQFDGKTFRIWKEQRFESAIPFDADGNYTGHSYLVRLMLSGGIDRTMG
WLLDFGDVKDRFKPIYRQLDHNPLDKLAGVRGADSAAVAEWIHAQLSPLVPELSRIDLMESDDAGVSLHFRQDMRWPLL
>Mature_239_residues
MMLDGPRALSWIASSFEAAHHLPHVPPGHKCGRLHGHGFGVRIVADAAQCGQRELARAWAPLHRRLNHHYLNDIAGLDNP
TSEVLAQWLHQQLSDAVPGLAWVEVRETHSAGSQFDGKTFRIWKEQRFESAIPFDADGNYTGHSYLVRLMLSGGIDRTMG
WLLDFGDVKDRFKPIYRQLDHNPLDKLAGVRGADSAAVAEWIHAQLSPLVPELSRIDLMESDDAGVSLHFRQDMRWPLL

Specific function: Catalyzes the conversion of 7,8-dihydroneopterin triphosphate (H2NTP) to 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) and acetaldehyde [H]

COG id: COG0720

COG function: function code H; 6-pyruvoyl-tetrahydropterin synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTPS family. QueD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789124, Length=116, Percent_Identity=51.7241379310345, Blast_Score=114, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007116
- InterPro:   IPR007115 [H]

Pfam domain/function: PF01242 PTPS [H]

EC number: 4.2.3.12

Molecular weight: Translated: 26843; Mature: 26843

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLDGPRALSWIASSFEAAHHLPHVPPGHKCGRLHGHGFGVRIVADAAQCGQRELARAWA
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
PLHRRLNHHYLNDIAGLDNPTSEVLAQWLHQQLSDAVPGLAWVEVRETHSAGSQFDGKTF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCE
RIWKEQRFESAIPFDADGNYTGHSYLVRLMLSGGIDRTMGWLLDFGDVKDRFKPIYRQLD
EHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHC
HNPLDKLAGVRGADSAAVAEWIHAQLSPLVPELSRIDLMESDDAGVSLHFRQDMRWPLL
CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MMLDGPRALSWIASSFEAAHHLPHVPPGHKCGRLHGHGFGVRIVADAAQCGQRELARAWA
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
PLHRRLNHHYLNDIAGLDNPTSEVLAQWLHQQLSDAVPGLAWVEVRETHSAGSQFDGKTF
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCE
RIWKEQRFESAIPFDADGNYTGHSYLVRLMLSGGIDRTMGWLLDFGDVKDRFKPIYRQLD
EHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHC
HNPLDKLAGVRGADSAAVAEWIHAQLSPLVPELSRIDLMESDDAGVSLHFRQDMRWPLL
CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mg2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 17.7 {6-(L-erythro-1,2-dihydroxypropyl} 5 {6-(L-erythro-1,2-dihydroxypropyl} 0.0091 {6-(L-erythro-1,2-dihydroxypropyl} 0.008 {6-(L-erythro-1,2-dihydroxypropyl} [C]

Substrates: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin

Specific reaction: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin = 6-pyruvoyl-5,6,7,8-tetrahydropterin + triphosphate

General reaction: Intramolecular redox reaction; P-O bond cleavage; Triphosphate elimination [C]

Inhibitor: (NH4)2SO4 [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]