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The map label for this gene is cph2 [H]

Identifier: 34498959

GI number: 34498959

Start: 3803153

End: 3804088

Strand: Direct

Name: cph2 [H]

Synonym: CV_3504

Alternate gene names: 34498959

Gene position: 3803153-3804088 (Clockwise)

Preceding gene: 34498958

Following gene: 34498962

Centisome position: 80.05

GC content: 65.71

Gene sequence:

>936_bases
ATGAACCAAGACACTCCCGACCTGGCCAGGCCAACAGCCGGCCGGCGCGGCCGGATACTGGTCGTCGACGATCAGCCGGC
CAACATCGTGGTCGCGCACCAGATCCTGCGCGAGCGGCACGACGTCTTCATGGCCACCGGCGGCGAACAGGCGCTGGAAT
TCTGCCGGACGACGCCGCCGGACATGTTGCTGCTGGATGTTGAAATGCCCGGCCTCAACGGCATGGACGTCTGCCGCCGC
CTGAAACAGGACCCAGCGACCCAGGACATCCCGGTGATCTTCGTCACCGGCCTGCAAAACCCGCAGCAAGAGCTTGCCTG
CTGGGAAGCCGGCGCCGCCGACTTCGTCAGCAAGCCTGTCACCCCCATCACCTTGCTCAACCGCGTCAACGCGCACCTCA
CGCTGAAATTCCAGGCGGACCAATTGCGCGTGCTGGCCTATCACGACGGCTTGACCGGCATCGCCAACCGCAGGAATTTC
GACGAGCGCCTGGAACGGGCCTGGCGGCATTGCCAGCGCAATCGCAGCACGCTGGCGCTGATTCTGTCCGACGTGGACCT
GTTCAAGAAATACAATGACAACTGCGGCCACCACGCCGGCGACGAATGCCTGCGGCAGGTGGCGACGGCGATCCAATCGC
AAATGCGCCGCCCTTACGACCTGGCCGCGCGCTACGGCGGCGAGGAGTTCGTATGCCTGCTGCCGGAAACCACGCTGGCC
GGCGCCGTGACCGTGGCGATCAAGATAGACGCGGCGGTGAGGGCGCTGCAGATCGAGCATCCGGCATCGAATGTCGATGC
CTGCGTCACGCTGAGCCAGGGCGTGGCCGTGATCGAACCCGAAACCGGCGCGGACAGCGAAAGGCTGCTTAGGCTGGCCG
ACGACCAGCTGTATCTTGCCAAGCGCACCGGCCGCGGCCGCGTGTGCGCGGTCTGA

Upstream 100 bases:

>100_bases
CAGGCGAATTCGACCGGCTCAACGAGGCGATCATGCAGATGAATTTCGCGGCTGCCGTCCGCCTGTGCGAGGACATGCAG
CAACAGAAAGCGCCACAGTC

Downstream 100 bases:

>100_bases
TAGCCTGTCCAAAGTCTTTTTGCGAGCAGCGCACTTCAGCCTGCAAGCCAGATGCAAGGCCTTGGCTATCCAAGGCCCAG
CCTGACAACGCGGCAGATGG

Product: two-component response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNQDTPDLARPTAGRRGRILVVDDQPANIVVAHQILRERHDVFMATGGEQALEFCRTTPPDMLLLDVEMPGLNGMDVCRR
LKQDPATQDIPVIFVTGLQNPQQELACWEAGAADFVSKPVTPITLLNRVNAHLTLKFQADQLRVLAYHDGLTGIANRRNF
DERLERAWRHCQRNRSTLALILSDVDLFKKYNDNCGHHAGDECLRQVATAIQSQMRRPYDLAARYGGEEFVCLLPETTLA
GAVTVAIKIDAAVRALQIEHPASNVDACVTLSQGVAVIEPETGADSERLLRLADDQLYLAKRTGRGRVCAV

Sequences:

>Translated_311_residues
MNQDTPDLARPTAGRRGRILVVDDQPANIVVAHQILRERHDVFMATGGEQALEFCRTTPPDMLLLDVEMPGLNGMDVCRR
LKQDPATQDIPVIFVTGLQNPQQELACWEAGAADFVSKPVTPITLLNRVNAHLTLKFQADQLRVLAYHDGLTGIANRRNF
DERLERAWRHCQRNRSTLALILSDVDLFKKYNDNCGHHAGDECLRQVATAIQSQMRRPYDLAARYGGEEFVCLLPETTLA
GAVTVAIKIDAAVRALQIEHPASNVDACVTLSQGVAVIEPETGADSERLLRLADDQLYLAKRTGRGRVCAV
>Mature_311_residues
MNQDTPDLARPTAGRRGRILVVDDQPANIVVAHQILRERHDVFMATGGEQALEFCRTTPPDMLLLDVEMPGLNGMDVCRR
LKQDPATQDIPVIFVTGLQNPQQELACWEAGAADFVSKPVTPITLLNRVNAHLTLKFQADQLRVLAYHDGLTGIANRRNF
DERLERAWRHCQRNRSTLALILSDVDLFKKYNDNCGHHAGDECLRQVATAIQSQMRRPYDLAARYGGEEFVCLLPETTLA
GAVTVAIKIDAAVRALQIEHPASNVDACVTLSQGVAVIEPETGADSERLLRLADDQLYLAKRTGRGRVCAV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=37.5, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=37.8698224852071, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=31.1377245508982, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=39.1812865497076, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=215, Percent_Identity=34.4186046511628, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=34.7058823529412, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787262, Length=199, Percent_Identity=33.6683417085427, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=34.5911949685535, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788394, Length=117, Percent_Identity=34.1880341880342, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=30.5389221556886, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=189, Percent_Identity=28.042328042328, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789149, Length=103, Percent_Identity=33.0097087378641, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786599, Length=115, Percent_Identity=31.304347826087, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 34440; Mature: 34440

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQDTPDLARPTAGRRGRILVVDDQPANIVVAHQILRERHDVFMATGGEQALEFCRTTPP
CCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEECCCHHHHHHHHCCCC
DMLLLDVEMPGLNGMDVCRRLKQDPATQDIPVIFVTGLQNPQQELACWEAGAADFVSKPV
CEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCC
TPITLLNRVNAHLTLKFQADQLRVLAYHDGLTGIANRRNFDERLERAWRHCQRNRSTLAL
CHHHHHHCCCEEEEEEEECCCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEE
ILSDVDLFKKYNDNCGHHAGDECLRQVATAIQSQMRRPYDLAARYGGEEFVCLLPETTLA
EHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCC
GAVTVAIKIDAAVRALQIEHPASNVDACVTLSQGVAVIEPETGADSERLLRLADDQLYLA
CEEEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECCCCCCCHHHHHHHHCCEEEEE
KRTGRGRVCAV
EECCCCCEECC
>Mature Secondary Structure
MNQDTPDLARPTAGRRGRILVVDDQPANIVVAHQILRERHDVFMATGGEQALEFCRTTPP
CCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCEEEECCCHHHHHHHHCCCC
DMLLLDVEMPGLNGMDVCRRLKQDPATQDIPVIFVTGLQNPQQELACWEAGAADFVSKPV
CEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCC
TPITLLNRVNAHLTLKFQADQLRVLAYHDGLTGIANRRNFDERLERAWRHCQRNRSTLAL
CHHHHHHCCCEEEEEEEECCCEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEE
ILSDVDLFKKYNDNCGHHAGDECLRQVATAIQSQMRRPYDLAARYGGEEFVCLLPETTLA
EHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCC
GAVTVAIKIDAAVRALQIEHPASNVDACVTLSQGVAVIEPETGADSERLLRLADDQLYLA
CEEEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECCCCCCCHHHHHHHHCCEEEEE
KRTGRGRVCAV
EECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]