| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is cga [H]
Identifier: 34498945
GI number: 34498945
Start: 3783551
End: 3786175
Strand: Direct
Name: cga [H]
Synonym: CV_3490
Alternate gene names: 34498945
Gene position: 3783551-3786175 (Clockwise)
Preceding gene: 34498941
Following gene: 34498946
Centisome position: 79.64
GC content: 68.76
Gene sequence:
>2625_bases ATGAAACACCCGTCCCTGATCCGCCCCGCCCTGCTGGGCGCCCTGATCGCCGCCCTGTTTGCGCCCGCCGTCCAGGCTGG GGAGGCATTCGGCTCGCCCGGCGGCGCGCCGGTGCGCGGCCCGGCAGCCAAGTCCTTCGTCGGCACCGCGGTCAACAGCC CTTCCCGCGTCTACTTCACCGGCTACCGCGGCATCGTGTCCGAGGTGTACTACCCGCTGCTGGACACGCCAGAATCGGTG GATCTGCAATTCCTGGTCGGCGACGCCGGCCGCACCTTCGTCGACGAGGAGAAACGCCAGGCCTACTCCGCCAGCCAGAG CGACAAGCGCACGATGAGCTGGGTCGCCAGCACCGGCAACGCCGGCCACAACTGGCAAATCAGCAAGCGCATCTTCGCCG ATCCCAACCGCGACGCGCTGGTGCAGCGCGTCACCTTCACCGCGCTGAACGGCCATACGGTCGGCGACTTCAATCTGTAC GCGCTGTTCAAGCCCTATCTGGACAATTCGGGCAGCGGCAACAGCGCGCAGACCGTGGCCGTTGCCGGCGGCTACGCGCT GGCGGCCAGCCGCAATAGCCGCGCGTCGGCGCTGATGGCCAGCCTGCCGTGGAAGACCGTCAACGGCCAGGCCATGCTGT CCAGCGGCTTCGTCGGCCAGAGCGACGGCTGGACCGACCTGATAGGCAGCGGCGACAACACGATGAACTGGACCTACGGC TCGGCCACCAACGGCAACGTCGCCCAAACCGGCTGGCTGGACCTGGGCGATCCAACCGCGACCAGCGTGTCTTTCGACAT GGTGCTGGCCTTCGGCAAGAATCAGGGCGACGCCGTCAACGCCGCGGCCGCGGCCCTCGGCAGCGACCTTTCCGCCGCGC AGCAGCAGTACGACAACGCCTGGCACGCCTACGCCGCCGGCCTGTCCAACCAGGGCGGCCTGGCGGATGACCGCTACTAC CTGGCGGCGATGACGCTGAAAACCATGCAGGACAAGAGCAACGGCGCGATGATCGCCGGCATCGGCACGCCGTGGGGCGA GACCCAGGGCGACACCAACCAGGGCGGCTACCACCTGGTGTGGCCGCGCGACCTATTCAAGTTCGCCAACGCCCTCTACA CCGCCGGCGACGCCGCCACCGCCGCCTCGGTGGTGAACTACCTGTTCAACACGCTGCAGCAAACCAGCGATTGCGGCGCG GCGGAATACAACGCGCCCGGCTGCGCCGCCGGCTACAGCCGCGTCGGCCGCTTCCCGCAAAACGCCTGGATCAGCGGCTG GCCGTACTGGCAGGGCACGCAAATGGACGAGCAGGCGATGCCCATCCTGCTGGCCTGGCGTCTGGGGCCGGCGGTGTCCA ATCCGCTGTGGCCCAAGATCAAGCAGACCGCCGACTACATCGTCGCCACCGGGCCATGGAGCTACCAGGAGCGCTGGGAG GAGAATGCCGGCTACTCGCCGTCCACCATCGCCGCCGAAATCGCCGGACTGGTGGCCGCCGCCGACATCGCCCGCGCCAA CGGCGACGACGCCAGCGCCGGCCGCTACCTGTCCGCCGCCGACTACTGGCAGCAAAACGTCGCAACCTGGACCTACACCA CCAGCGGCAGCTTCGGCAACGGCAGCTACTATGTCCGGATCAACCCGGCCAACCGCTCCGGAAGCGGCGCCGACCGCGCC AGCTTCAATCCGGCGGCGGGGCCGGACACGCCGCAAACGCTGACGGTCAAGAACGGCGGCGGCAGCCACGACGCCCGCCG CGTCGTCGACGGCGGCTTCCTGGAACTGGTGCGGATGGGCGTCAAGCGCGCCGACGACCCCACCATCGTCAACACCATGG CCGTGTTCGACAGCGTGCTGGGCCAGAACCTGGCGCTGCCCGGCGCGCCTGCGCTGCCGGCCAACGCCTGGTTCCGCTAC AATTTCGACGGCTACGGCGAGCATAACGACGGCCGCGACTTCGACGGCACGGGCGCGGGCCGGCTGTGGCCGATCTTCAC CGCCGAGCGCGGCATGTACGAGATCGCCCGCCAGGGCGCTGGCAGCGCCGGCCAGCCCTATTTCGCCACGCTGAAGCTGC TGGCCACGCCGGAAGGCATGTTGCCGGAACAAGTGTGGTCCAACAGCGCGACGCTGCCGGACGGCTGGGCCGTGACCACG CCGGCCGGCTACCGGCCAGGCAGCGCCACCAAGTCGATGGGACCGTTGAACTGGGCGATGGGCGAATACATCAGCCTGCT GGCCTCGATCGGCGCCGGCCGGGTGGTCGACATCCCGCAGGTGGTCTGCGCGCGCTACAACAACTGCCGCGCCGCGCCCA AGTCCGGCGAGGTGGCGGTGGCCATCAACGCCAGCGCTACCACCCAATGGGGCCAGCAAGTCTATGTCACCGGCAACGCC CGCGCGCTGGGCAACTGGAACACCGACCTCGGCATCCCGCTGGACGCGGCCGCCTATCCGTCGTGGAAAAACGGCGCCAA CCTGCCGGCCGGCCAGCAAATCGCCTACAAGTATTACCGCAAGAACGCCGACGGCAGCGTGAGCTGGGAAAACCTGGCCG GCAACCGCAGTCTGCAGACACCCGCCAGCGGCAGCCTCAGCCTGAATGATCAGGTGAACTGGTGA
Upstream 100 bases:
>100_bases TGGCGTCGGCATTTATTTGGTATATTGCGTAGCAAAATTACAATGACATCAAGCGAAAAAGCTTGATCAACGCAACCCCT TGAAAGAGGAGACAATCATC
Downstream 100 bases:
>100_bases GCCGGCGCCGCCTCTGGCCCGCCGTCCTGCTGATCGGGGCGGCGGCCGGCGGCGCGGCCTGGCGGTTTTGGCCGGCGGGC TCGCCGCCTCCGCCGGCCAT
Product: glucan 1,4- a-glucosidase
Products: NA
Alternate protein names: 1,4-alpha-D-glucan glucohydrolase; Glucan 1,4-alpha-glucosidase [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MKHPSLIRPALLGALIAALFAPAVQAGEAFGSPGGAPVRGPAAKSFVGTAVNSPSRVYFTGYRGIVSEVYYPLLDTPESV DLQFLVGDAGRTFVDEEKRQAYSASQSDKRTMSWVASTGNAGHNWQISKRIFADPNRDALVQRVTFTALNGHTVGDFNLY ALFKPYLDNSGSGNSAQTVAVAGGYALAASRNSRASALMASLPWKTVNGQAMLSSGFVGQSDGWTDLIGSGDNTMNWTYG SATNGNVAQTGWLDLGDPTATSVSFDMVLAFGKNQGDAVNAAAAALGSDLSAAQQQYDNAWHAYAAGLSNQGGLADDRYY LAAMTLKTMQDKSNGAMIAGIGTPWGETQGDTNQGGYHLVWPRDLFKFANALYTAGDAATAASVVNYLFNTLQQTSDCGA AEYNAPGCAAGYSRVGRFPQNAWISGWPYWQGTQMDEQAMPILLAWRLGPAVSNPLWPKIKQTADYIVATGPWSYQERWE ENAGYSPSTIAAEIAGLVAAADIARANGDDASAGRYLSAADYWQQNVATWTYTTSGSFGNGSYYVRINPANRSGSGADRA SFNPAAGPDTPQTLTVKNGGGSHDARRVVDGGFLELVRMGVKRADDPTIVNTMAVFDSVLGQNLALPGAPALPANAWFRY NFDGYGEHNDGRDFDGTGAGRLWPIFTAERGMYEIARQGAGSAGQPYFATLKLLATPEGMLPEQVWSNSATLPDGWAVTT PAGYRPGSATKSMGPLNWAMGEYISLLASIGAGRVVDIPQVVCARYNNCRAAPKSGEVAVAINASATTQWGQQVYVTGNA RALGNWNTDLGIPLDAAAYPSWKNGANLPAGQQIAYKYYRKNADGSVSWENLAGNRSLQTPASGSLSLNDQVNW
Sequences:
>Translated_874_residues MKHPSLIRPALLGALIAALFAPAVQAGEAFGSPGGAPVRGPAAKSFVGTAVNSPSRVYFTGYRGIVSEVYYPLLDTPESV DLQFLVGDAGRTFVDEEKRQAYSASQSDKRTMSWVASTGNAGHNWQISKRIFADPNRDALVQRVTFTALNGHTVGDFNLY ALFKPYLDNSGSGNSAQTVAVAGGYALAASRNSRASALMASLPWKTVNGQAMLSSGFVGQSDGWTDLIGSGDNTMNWTYG SATNGNVAQTGWLDLGDPTATSVSFDMVLAFGKNQGDAVNAAAAALGSDLSAAQQQYDNAWHAYAAGLSNQGGLADDRYY LAAMTLKTMQDKSNGAMIAGIGTPWGETQGDTNQGGYHLVWPRDLFKFANALYTAGDAATAASVVNYLFNTLQQTSDCGA AEYNAPGCAAGYSRVGRFPQNAWISGWPYWQGTQMDEQAMPILLAWRLGPAVSNPLWPKIKQTADYIVATGPWSYQERWE ENAGYSPSTIAAEIAGLVAAADIARANGDDASAGRYLSAADYWQQNVATWTYTTSGSFGNGSYYVRINPANRSGSGADRA SFNPAAGPDTPQTLTVKNGGGSHDARRVVDGGFLELVRMGVKRADDPTIVNTMAVFDSVLGQNLALPGAPALPANAWFRY NFDGYGEHNDGRDFDGTGAGRLWPIFTAERGMYEIARQGAGSAGQPYFATLKLLATPEGMLPEQVWSNSATLPDGWAVTT PAGYRPGSATKSMGPLNWAMGEYISLLASIGAGRVVDIPQVVCARYNNCRAAPKSGEVAVAINASATTQWGQQVYVTGNA RALGNWNTDLGIPLDAAAYPSWKNGANLPAGQQIAYKYYRKNADGSVSWENLAGNRSLQTPASGSLSLNDQVNW >Mature_874_residues MKHPSLIRPALLGALIAALFAPAVQAGEAFGSPGGAPVRGPAAKSFVGTAVNSPSRVYFTGYRGIVSEVYYPLLDTPESV DLQFLVGDAGRTFVDEEKRQAYSASQSDKRTMSWVASTGNAGHNWQISKRIFADPNRDALVQRVTFTALNGHTVGDFNLY ALFKPYLDNSGSGNSAQTVAVAGGYALAASRNSRASALMASLPWKTVNGQAMLSSGFVGQSDGWTDLIGSGDNTMNWTYG SATNGNVAQTGWLDLGDPTATSVSFDMVLAFGKNQGDAVNAAAAALGSDLSAAQQQYDNAWHAYAAGLSNQGGLADDRYY LAAMTLKTMQDKSNGAMIAGIGTPWGETQGDTNQGGYHLVWPRDLFKFANALYTAGDAATAASVVNYLFNTLQQTSDCGA AEYNAPGCAAGYSRVGRFPQNAWISGWPYWQGTQMDEQAMPILLAWRLGPAVSNPLWPKIKQTADYIVATGPWSYQERWE ENAGYSPSTIAAEIAGLVAAADIARANGDDASAGRYLSAADYWQQNVATWTYTTSGSFGNGSYYVRINPANRSGSGADRA SFNPAAGPDTPQTLTVKNGGGSHDARRVVDGGFLELVRMGVKRADDPTIVNTMAVFDSVLGQNLALPGAPALPANAWFRY NFDGYGEHNDGRDFDGTGAGRLWPIFTAERGMYEIARQGAGSAGQPYFATLKLLATPEGMLPEQVWSNSATLPDGWAVTT PAGYRPGSATKSMGPLNWAMGEYISLLASIGAGRVVDIPQVVCARYNNCRAAPKSGEVAVAINASATTQWGQQVYVTGNA RALGNWNTDLGIPLDAAAYPSWKNGANLPAGQQIAYKYYRKNADGSVSWENLAGNRSLQTPASGSLSLNDQVNW
Specific function: CGA has typical kinetic properties for a glucoamylase, but this bacterial enzyme had higher isomaltose-hydrolyzing activity than other eukaryotic glucoamylases [H]
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 15 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR006425 - InterPro: IPR015220 - InterPro: IPR011013 - InterPro: IPR014718 - InterPro: IPR000165 - InterPro: IPR011613 [H]
Pfam domain/function: PF09137 Glucodextran_N; PF00723 Glyco_hydro_15 [H]
EC number: =3.2.1.3 [H]
Molecular weight: Translated: 92662; Mature: 92662
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS00018 EF_HAND_1 ; PS51166 CBM20
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHPSLIRPALLGALIAALFAPAVQAGEAFGSPGGAPVRGPAAKSFVGTAVNSPSRVYFT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEE GYRGIVSEVYYPLLDTPESVDLQFLVGDAGRTFVDEEKRQAYSASQSDKRTMSWVASTGN CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCC AGHNWQISKRIFADPNRDALVQRVTFTALNGHTVGDFNLYALFKPYLDNSGSGNSAQTVA CCCCEEECCEEECCCCHHHHHHEEEEEEECCCCCCCEEEEEEEEHHCCCCCCCCCCEEEE VAGGYALAASRNSRASALMASLPWKTVNGQAMLSSGFVGQSDGWTDLIGSGDNTMNWTYG EECCEEEEECCCCHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHCCCCCCCEEEEEC SATNGNVAQTGWLDLGDPTATSVSFDMVLAFGKNQGDAVNAAAAALGSDLSAAQQQYDNA CCCCCCEEEECCEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHCCH WHAYAAGLSNQGGLADDRYYLAAMTLKTMQDKSNGAMIAGIGTPWGETQGDTNQGGYHLV HHHHHHCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEE WPRDLFKFANALYTAGDAATAASVVNYLFNTLQQTSDCGAAEYNAPGCAAGYSRVGRFPQ CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC NAWISGWPYWQGTQMDEQAMPILLAWRLGPAVSNPLWPKIKQTADYIVATGPWSYQERWE CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHH ENAGYSPSTIAAEIAGLVAAADIARANGDDASAGRYLSAADYWQQNVATWTYTTSGSFGN HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHCCEEEEEECCCCCCC GSYYVRINPANRSGSGADRASFNPAAGPDTPQTLTVKNGGGSHDARRVVDGGFLELVRMG CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHH VKRADDPTIVNTMAVFDSVLGQNLALPGAPALPANAWFRYNFDGYGEHNDGRDFDGTGAG HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC RLWPIFTAERGMYEIARQGAGSAGQPYFATLKLLATPEGMLPEQVWSNSATLPDGWAVTT CEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCEEECC PAGYRPGSATKSMGPLNWAMGEYISLLASIGAGRVVDIPQVVCARYNNCRAAPKSGEVAV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCCCCEEE AINASATTQWGQQVYVTGNARALGNWNTDLGIPLDAAAYPSWKNGANLPAGQQIAYKYYR EEECCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH KNADGSVSWENLAGNRSLQTPASGSLSLNDQVNW CCCCCCEEHHHCCCCCCCCCCCCCCEECCCCCCC >Mature Secondary Structure MKHPSLIRPALLGALIAALFAPAVQAGEAFGSPGGAPVRGPAAKSFVGTAVNSPSRVYFT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEE GYRGIVSEVYYPLLDTPESVDLQFLVGDAGRTFVDEEKRQAYSASQSDKRTMSWVASTGN CHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCC AGHNWQISKRIFADPNRDALVQRVTFTALNGHTVGDFNLYALFKPYLDNSGSGNSAQTVA CCCCEEECCEEECCCCHHHHHHEEEEEEECCCCCCCEEEEEEEEHHCCCCCCCCCCEEEE VAGGYALAASRNSRASALMASLPWKTVNGQAMLSSGFVGQSDGWTDLIGSGDNTMNWTYG EECCEEEEECCCCHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHCCCCCCCEEEEEC SATNGNVAQTGWLDLGDPTATSVSFDMVLAFGKNQGDAVNAAAAALGSDLSAAQQQYDNA CCCCCCEEEECCEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHCCH WHAYAAGLSNQGGLADDRYYLAAMTLKTMQDKSNGAMIAGIGTPWGETQGDTNQGGYHLV HHHHHHCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEE WPRDLFKFANALYTAGDAATAASVVNYLFNTLQQTSDCGAAEYNAPGCAAGYSRVGRFPQ CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC NAWISGWPYWQGTQMDEQAMPILLAWRLGPAVSNPLWPKIKQTADYIVATGPWSYQERWE CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHH ENAGYSPSTIAAEIAGLVAAADIARANGDDASAGRYLSAADYWQQNVATWTYTTSGSFGN HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHCCEEEEEECCCCCCC GSYYVRINPANRSGSGADRASFNPAAGPDTPQTLTVKNGGGSHDARRVVDGGFLELVRMG CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHH VKRADDPTIVNTMAVFDSVLGQNLALPGAPALPANAWFRYNFDGYGEHNDGRDFDGTGAG HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC RLWPIFTAERGMYEIARQGAGSAGQPYFATLKLLATPEGMLPEQVWSNSATLPDGWAVTT CEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHCCCCCCCCCEEECC PAGYRPGSATKSMGPLNWAMGEYISLLASIGAGRVVDIPQVVCARYNNCRAAPKSGEVAV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCCCCCCEEE AINASATTQWGQQVYVTGNARALGNWNTDLGIPLDAAAYPSWKNGANLPAGQQIAYKYYR EEECCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH KNADGSVSWENLAGNRSLQTPASGSLSLNDQVNW CCCCCCEEHHHCCCCCCCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1633799 [H]